View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_122 (Length: 271)
Name: NF11171A_low_122
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_122 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4082898 - 4083159
Alignment:
| Q |
1 |
aatagaaatcacttacatagataatatgttttgtcatgggaagaagattgccctatgacaatgccaataattcattgataggtccatttctatatttttc |
100 |
Q |
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| T |
4082898 |
aatagaaatcacttacatcgataatatcttttgtcatgggaagaagattgccctatgacaatgccaacaatttattaataggtccatttctaaatttttc |
4082997 |
T |
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| Q |
101 |
attctccctaataggattagcaacaagcattgccataatcacaaccctatgtagtgttcgatttcgaagaagaaaattgacgccgccccctacaacaccg |
200 |
Q |
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| T |
4082998 |
attctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaattgacgccgccccctacaacaccg |
4083097 |
T |
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| Q |
201 |
atatcaaaccccaaagaagccacaaccacggacaaaaacacaacaaacgctacaatattcat |
262 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4083098 |
atatcaaacaccaaagaagccacaaccacggacaaaaacacaacaaacgctacaatattcat |
4083159 |
T |
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