View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_127 (Length: 267)

Name: NF11171A_low_127
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_127
NF11171A_low_127
[»] chr2 (4 HSPs)
chr2 (61-255)||(43777256-43777452)
chr2 (122-204)||(2995839-2995920)
chr2 (132-181)||(20625300-20625349)
chr2 (122-195)||(23914731-23914804)
[»] chr1 (4 HSPs)
chr1 (122-198)||(42561686-42561762)
chr1 (122-197)||(42560996-42561071)
chr1 (135-181)||(34969385-34969431)
chr1 (104-181)||(40368038-40368115)
[»] chr4 (4 HSPs)
chr4 (135-181)||(32547389-32547435)
chr4 (135-181)||(2133521-2133567)
chr4 (122-204)||(17982095-17982176)
chr4 (135-181)||(18419292-18419338)
[»] chr8 (3 HSPs)
chr8 (134-199)||(7718313-7718378)
chr8 (131-196)||(13765852-13765917)
chr8 (162-202)||(14537999-14538039)
[»] chr5 (3 HSPs)
chr5 (109-198)||(3955872-3955961)
chr5 (122-195)||(27175125-27175198)
chr5 (135-181)||(42027689-42027735)
[»] chr3 (1 HSPs)
chr3 (124-193)||(49758125-49758194)
[»] scaffold0009 (1 HSPs)
scaffold0009 (122-181)||(53670-53729)
[»] chr7 (1 HSPs)
chr7 (122-194)||(24650234-24650306)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 61 - 255
Target Start/End: Original strand, 43777256 - 43777452
Alignment:
Q  61 aagaaaacttggatctatttagctactatatgtgacgttaacg--tatctttttcaactagagcaacaatatatcattattatagaaaagattgttaaag 158  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43777256 aagaaaacttggatctatttagctactatatgtgacgttaactcttatctttttcaactagagcaacaatatatcattattatagaaaagattgttaaag 43777355  T
Q  159 agaataattgaaataatgaaaaatctagcccaaaatctctcattcctcatgcatattgttttgttaaagactcttatatattgttatagataatatt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43777356 agaataattgaaataatgaaaaatctagcccaaaatctctcattcctcatgtatattgttttgttaaagactcttatatattgttatagataatatt 43777452  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 2995920 - 2995839
Alignment:
Q  122 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctctcattcc 204  Q
    |||||||||||||||| |||||||||  ||||| ||| |  |||||| ||||||||||||| |||  |||||| |||||||||    
T  2995920 caacaatatatcattactatagaaaattttgtttaag-gtgtaattggaataatgaaaaatgtaggtcaaaatatctcattcc 2995839  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 20625349 - 20625300
Alignment:
Q  132 tcattattatagaaaagattgttaaagagaataattgaaataatgaaaaa 181  Q
    |||||||||||||||| ||||||  |||| |||||||| |||||||||||    
T  20625349 tcattattatagaaaaaattgttttagagtataattgagataatgaaaaa 20625300  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 23914804 - 23914731
Alignment:
Q  122 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatc 195  Q
    |||||||||| |||| ||||||  ||  ||||| ||||| ||||||| |||||||||||||| || ||||||||    
T  23914804 caacaatataacattcttataggcaaatttgtttaagagtataattggaataatgaaaaatccagtccaaaatc 23914731  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 42561686 - 42561762
Alignment:
Q  122 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctct 198  Q
    |||||||||| |||| ||||||||||  ||||| ||| ||||||||| ||||||||||||   ||||||||||||||    
T  42561686 caacaatataacattgttatagaaaaatttgttgaagggaataattggaataatgaaaaagtcagcccaaaatctct 42561762  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 42560996 - 42561071
Alignment:
Q  122 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctc 197  Q
    |||||||||| |||||||||||||||  ||||| ||| | ||||||| |||||||||||||| |  ||||||||||    
T  42560996 caacaatataacattattatagaaaaatttgtttaagggtataattggaataatgaaaaatccaatccaaaatctc 42561071  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 34969385 - 34969431
Alignment:
Q  135 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 181  Q
    ||||||||||||| |||||| ||||| ||||||| ||||||||||||    
T  34969385 ttattatagaaaaaattgtttaagagtataattggaataatgaaaaa 34969431  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 40368115 - 40368038
Alignment:
Q  104 tatctttttcaactagagcaacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaa 181  Q
    ||||||||||||  | | |||||||||| ||||| |||||||||  ||||| ||| | ||||||| ||||||||||||    
T  40368115 tatctttttcaatgacaccaacaatataacattaatatagaaaaatttgtttaagggtataattggaataatgaaaaa 40368038  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 32547389 - 32547435
Alignment:
Q  135 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 181  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  32547389 ttattatagaaaaaattgtttaagagtataattgaaataatgaaaaa 32547435  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 2133567 - 2133521
Alignment:
Q  135 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 181  Q
    ||||||||||||| |||||| ||||| |||||||| |||||||||||    
T  2133567 ttattatagaaaaaattgtttaagagtataattgagataatgaaaaa 2133521  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 17982176 - 17982095
Alignment:
Q  122 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctctcattcc 204  Q
    |||||||||||||||| |||||||||  ||||| ||| |  |||||| ||||||||||||| |||  |||||| |||||||||    
T  17982176 caacaatatatcattactatagaaaattttgtttaag-gtgtaattggaataatgaaaaatgtaggtcaaaatatctcattcc 17982095  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 18419338 - 18419292
Alignment:
Q  135 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 181  Q
    ||||||||||||| |||||| ||| | ||||||||||||||||||||    
T  18419338 ttattatagaaaaaattgttcaagggtataattgaaataatgaaaaa 18419292  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 7718313 - 7718378
Alignment:
Q  134 attattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctctc 199  Q
    ||||||||||||||| ||||| |||   ||||||  ||||||||||||||||| ||||||||||||    
T  7718313 attattatagaaaagtttgttcaaggatataattagaataatgaaaaatctagtccaaaatctctc 7718378  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 13765917 - 13765852
Alignment:
Q  131 atcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatct 196  Q
    ||||||||||||||||| ||||||  |||| |||||| | ||||||||||||  ||||||||||||    
T  13765917 atcattattatagaaaaaattgttttagagtataatttagataatgaaaaattcagcccaaaatct 13765852  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 14538039 - 14537999
Alignment:
Q  162 ataattgaaataatgaaaaatctagcccaaaatctctcatt 202  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  14538039 ataattgaaataataaaaaatatagcccaaaatctctcatt 14537999  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 3955872 - 3955961
Alignment:
Q  109 ttttcaactagagcaacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatctct 198  Q
    |||||||| | | ||||||||||||||||||| ||||||  ||||| ||  | | ||||| |||||||||||||| | ||||||||||||    
T  3955872 ttttcaacgacatcaacaatatatcattattaaagaaaaatttgtttaaaggtacaattggaataatgaaaaatccaacccaaaatctct 3955961  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 27175198 - 27175125
Alignment:
Q  122 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaatc 195  Q
    |||||||||| ||||||||||||||| |||||| ||  | ||||||| |||||  ||||||| |||||||||||    
T  27175198 caacaatataacattattatagaaaacattgtttaatggtataattggaataacaaaaaatccagcccaaaatc 27175125  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 42027689 - 42027735
Alignment:
Q  135 ttattatagaaaagattgttaaagagaataattgaaataatgaaaaa 181  Q
    ||||||||||||| |||||| ||||| |||||||| |||||||||||    
T  42027689 ttattatagaaaaaattgtttaagagtataattgagataatgaaaaa 42027735  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 49758125 - 49758194
Alignment:
Q  124 acaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaa 193  Q
    ||||||||  |||||||||||||| |||||| ||| | |||||||||||||| ||||||| | |||||||    
T  49758125 acaatataatattattatagaaaaaattgtttaagggtataattgaaataataaaaaatccaacccaaaa 49758194  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 53729 - 53670
Alignment:
Q  122 caacaatatatcattattatagaaaagattg-ttaaagagaataattgaaataatgaaaaa 181  Q
    |||||||||| |||||||||||||||  ||| |||||||  ||||||||||||||||||||    
T  53729 caacaatataacattattatagaaaaatttgtttaaaga-tataattgaaataatgaaaaa 53670  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 24650306 - 24650234
Alignment:
Q  122 caacaatatatcattattatagaaaagattgttaaagagaataattgaaataatgaaaaatctagcccaaaat 194  Q
    |||||||||  |||||||| || |||| ||||| ||| |  |||||||||||||||||||| ||||| |||||    
T  24650306 caacaatattgcattattacaggaaagtttgtttaagggtttaattgaaataatgaaaaatgtagcctaaaat 24650234  T

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