View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_129 (Length: 267)
Name: NF11171A_low_129
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_129 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 4406664 - 4406420
Alignment:
| Q |
14 |
caaactttgttggaggttgcagtaaaactgttgtagaaacataccatcttattgatgatataataaggtttaaagatattacaacttgtgtgtctttggg |
113 |
Q |
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| T |
4406664 |
caaactttgttggaggttgcagtaaaactgttgtagaaatataccatcttattgatgatataataaggtttaaagatattacaacttgtgt--ctttggg |
4406567 |
T |
|
| Q |
114 |
aaatgtcttaaattatgagaaagagattcctattattcatgttgaagtggttactatgcaaccaatgcaggttaatgattctcttctggttgggaaacaa |
213 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
4406566 |
aaatgtcttaaattatgaggaagagattcctattattcatgttgaagtggttactatgcaaccaatgcaagttaatgattctgttctggatgggaaacaa |
4406467 |
T |
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| Q |
214 |
atggaggatcaataaagcaataaatttcatgttatgtatattcttcg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4406466 |
atggaggatcaataaagcaataaatttcatgttatgtatattgttcg |
4406420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 39280039 - 39279922
Alignment:
| Q |
21 |
tgttggaggttgcagtaaaactgttgtagaaacataccatcttattgatgatataataaggtttaaagatattacaacttgtgtgtctttgggaaatgtc |
120 |
Q |
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||||| |||||| ||||||||||||||||||| | ||| ||||||||||||||||||| ||| ||| || |||||||||||| || | ||||| |||| |
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| T |
39280039 |
tgttgcaggttgtagtaaaactgttgtagaaaaagaccctcttattgatgatataatatggtctaaggaagttacaacttgtgagtttgtgggatatgtt |
39279940 |
T |
|
| Q |
121 |
ttaaattatgagaaagag |
138 |
Q |
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| T |
39279939 |
ttaaaccatgaggaagag |
39279922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 39358166 - 39358277
Alignment:
| Q |
14 |
caaactttgttggaggttgcagtaaaactgttgtagaaacataccatcttattgatgatataataaggtttaaagatattacaacttgtgtgtctttggg |
113 |
Q |
| |
|
||||| |||||| |||| |||| |||||||||||||||| | ||| ||||||||||||||||||||||| ||||| |||||| ||||| || | |||| |
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| T |
39358166 |
caaacattgttgcaggtagcagcaaaactgttgtagaaatagaccctcttattgatgatataataaggtctaaagcagttacaaattgtgagtttgtggg |
39358265 |
T |
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| Q |
114 |
aaatgtcttaaa |
125 |
Q |
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|||||| ||||| |
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| T |
39358266 |
aaatgttttaaa |
39358277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 34032793 - 34032913
Alignment:
| Q |
29 |
gttgcagtaaaactgttgtagaaacataccatcttattgatgatataataaggtttaaagatattacaacttgtgtgtctttgggaaatgtcttaaatta |
128 |
Q |
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|||||||||||||||||||||||| | || |||||||||||||||| |||||||||| || || |||||||||||| | ||| | |||||||||| | |
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| T |
34032793 |
gttgcagtaaaactgttgtagaaatagtcc-tcttattgatgatatactaaggtttaaggaaatagcaacttgtgtgtttgtggaagatgtcttaaacca |
34032891 |
T |
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| Q |
129 |
tgagaaagagattcctattatt |
150 |
Q |
| |
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|||| |||||||| ||| |||| |
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| T |
34032892 |
tgaggaagagatttctaatatt |
34032913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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