View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_136 (Length: 263)
Name: NF11171A_low_136
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_136 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 23227727 - 23227474
Alignment:
| Q |
10 |
aagaatatggaggtgaaggggtaaagcaaaatctatggggcgtggggagtggggtaaatccaaacctattggggtaaggcaaaaccctagtggggtaaaa |
109 |
Q |
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| T |
23227727 |
aagaatatagaggtgaaggggtaaagcaaaatctatggggagtggggagtcgggtaaatccaaacctattggggtaaagcaaaaccctagtgcggtaaaa |
23227628 |
T |
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| Q |
110 |
agaaaccctcttaaggtaaatcaaaatccagggggcgactgcggtaacttgtctaatgcgaaaaagacattcaatgtcaactttgcacccaaacaaacta |
209 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |
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| T |
23227627 |
agaaaccatcttaaggtaaatcaaaatcttgggggcgactgcggtaacttgtctaatgcgaaaaagacattcaatgtcaaccttgcatccaaacaaattg |
23227528 |
T |
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| Q |
210 |
cacttctttgcacctctttttaaatagacatctttctatgaaagaccttggatg |
263 |
Q |
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| T |
23227527 |
cacttctttgcacctcttttcaaatagacctctttctatgaaagaccttggatg |
23227474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 15794091 - 15794059
Alignment:
| Q |
157 |
cttgtctaatgcgaaaaagacattcaatgtcaa |
189 |
Q |
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| T |
15794091 |
cttgtctaatgcgaaaaagacattcgatgtcaa |
15794059 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 26616540 - 26616490
Alignment:
| Q |
157 |
cttgtctaatgcgaaaaagacattcaatgtcaactttgcacccaaacaaac |
207 |
Q |
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| T |
26616540 |
cttgtctaatgcgaaaaagaccttcaatgtcaaccttgcacccaaacaaac |
26616490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 31267667 - 31267730
Alignment:
| Q |
157 |
cttgtctaatgcgaaaaagacattcaatgtcaactttgcacccaaacaaactacacttctttgca |
221 |
Q |
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| T |
31267667 |
cttgtctaatgcgaaaa-gaccttcaatgtcaaccttgcacccaaacaaaccgcacttctttgca |
31267730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 24419298 - 24419235
Alignment:
| Q |
158 |
ttgtctaatgcgaaaaagacattcaatgtcaactttgcacccaaacaaactacacttctttgca |
221 |
Q |
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|||||||||||||||||||| |||||| ||||| || || ||||||| || |||||||||||| |
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| T |
24419298 |
ttgtctaatgcgaaaaagactttcaatttcaaccttctacacaaacaacctgcacttctttgca |
24419235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 7411876 - 7411814
Alignment:
| Q |
159 |
tgtctaatgcgaaaaagacattcaatgtcaactttgcacccaaacaaactacacttctttgca |
221 |
Q |
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|||||||||| |||||||| ||||||||||| |||||| ||||||||| ||||| |||||| |
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| T |
7411876 |
tgtctaatgcaaaaaagaccctcaatgtcaaccttgcactcaaacaaacctcacttatttgca |
7411814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 7412030 - 7411974
Alignment:
| Q |
52 |
tggggagtggggtaaatccaaacctattggggtaaggcaaaaccctagtggggtaaa |
108 |
Q |
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| T |
7412030 |
tggggactagggtaaatctaaatctattggggtaaagcaaaaccctcttggggtaaa |
7411974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 3096483 - 3096419
Alignment:
| Q |
157 |
cttgtctaatgcgaaaaagacattcaatgtcaactttgcacccaaacaaactacacttctttgca |
221 |
Q |
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||||||||||||||||||||| |||||||||||| ||||| ||||| |||| ||||| |||||| |
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| T |
3096483 |
cttgtctaatgcgaaaaagaccttcaatgtcaaccttgcatccaaataaaccgcacttttttgca |
3096419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 1885624 - 1885560
Alignment:
| Q |
157 |
cttgtctaatgcgaaaaagacattcaatgtcaactttgcacccaaacaaactacacttctttgca |
221 |
Q |
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||||||||| |||||| ||||||| ||||||||| |||||| ||||||||| |||||||||||| |
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| T |
1885624 |
cttgtctaaggcgaaagagacattgaatgtcaaccttgcactcaaacaaaccgcacttctttgca |
1885560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 37840 - 37904
Alignment:
| Q |
157 |
cttgtctaatgcgaaaaagacattcaatgtcaactttgcacccaaacaaactacacttctttgca |
221 |
Q |
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|||||| || |||||| || |||| ||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
37840 |
cttgtcaaaggcgaaagagtcattgaatgtcaaccttgcacccaaaaaaatcacacttctttgca |
37904 |
T |
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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 122722 - 122750
Alignment:
| Q |
13 |
aatatggaggtgaaggggtaaagcaaaat |
41 |
Q |
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| T |
122722 |
aatatggaggtgaaggggtaaagcaaaat |
122750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 15474232 - 15474296
Alignment:
| Q |
157 |
cttgtctaatgcgaaaaagacattcaatgtcaactttgcacccaaacaaactacacttctttgca |
221 |
Q |
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||||||||| |||||| || | | ||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
15474232 |
cttgtctaaggcgaaagagtccatgaatgtcaaccttgcacccaaacaaactgcacttatttgca |
15474296 |
T |
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