View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171A_low_14 (Length: 450)
Name: NF11171A_low_14
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 25 - 445
Target Start/End: Original strand, 49375409 - 49375829
Alignment:
| Q |
25 |
aaaagtaacagtcttctataaatgccgttgagaagtggctgtggacgactagttctgtttctgttctcgattgaagcccaaagttaacaaacttttttct |
124 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49375409 |
aaaagtaatagtctt-tataaatgccgttgagaagtggctatggatgactagtcctgtttctgttctcgattgaagcccaaagttaacaaacttttttct |
49375507 |
T |
|
| Q |
125 |
ttgcaattttctacatgcactgctaaatacaccccatttttatttcccacgccaacatcctaactcataccatactcctatttttctcattcactatttg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49375508 |
ttgcaattttctacatgcactgctaaatacaccccatttttatttcccacgccaacatcctaactcataccatactcctatttttctcattcactatttg |
49375607 |
T |
|
| Q |
225 |
aaagagccctaaaatttctttctcatcccataccaagcaacgtgtgttttgctcatctcacactgcattttctaaagtttaaacaacacagagtgcacgt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
49375608 |
aaagagccctaaaatttctttctcatcccataccaagcaacgtgtgttttgctcatctcacactgcattttctaaactttaaacaatacagagtgcacgt |
49375707 |
T |
|
| Q |
325 |
tcaaggcaaaaccacacaacttctcttttaccttaattaaagttttaacatgtcatttaacttc--nnnnnnncccaaattagtcatttatcttnnnnnn |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49375708 |
tcaaggcaaaaccacacaacttctcttttaccttaattaaagttttaacatgtcatttaacttcttcttttttcccaaattagtcatttatctt-aaaaa |
49375806 |
T |
|
| Q |
423 |
ntatttaactgcttattcaactt |
445 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
49375807 |
atatttaactgcttattcaactt |
49375829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University