View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_142 (Length: 257)

Name: NF11171A_low_142
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_142
NF11171A_low_142
[»] chr5 (3 HSPs)
chr5 (26-252)||(28298171-28298397)
chr5 (26-160)||(38471591-38471726)
chr5 (204-252)||(31678502-31678549)
[»] chr7 (2 HSPs)
chr7 (171-254)||(12600032-12600114)
chr7 (74-132)||(12599790-12599849)
[»] chr2 (2 HSPs)
chr2 (26-132)||(45108353-45108460)
chr2 (78-158)||(25057240-25057320)
[»] chr4 (1 HSPs)
chr4 (83-159)||(25242808-25242885)
[»] chr3 (3 HSPs)
chr3 (171-249)||(14487113-14487190)
chr3 (74-166)||(14513594-14513688)
chr3 (171-252)||(14513764-14513844)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 26 - 252
Target Start/End: Original strand, 28298171 - 28298397
Alignment:
Q  26 caagcgtcgagcctattaaggcgtagatgttggttctttgtttgattgacccatacgagtccacagtccaccaagcgtcgaggtgttaaggcatagatgt 125  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28298171 caagcgtcgaggctattaaggcgtagatgttggttctttgtttgattgacccatacgagtccacagtccaccaagcgtcgaggtgttaaggcatagatgt 28298270  T
Q  126 ttgttctctatgcagtcgacccataccagtccactgtccacgaagtaactagttcgtaaccgggttatcaacaccgacttgattcaaacttaattgtcat 225  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28298271 ttgttcactatgcagtcgacccataccagtccaccgtccacgtagtaactagttcgtaaccgggttatcaacaccgacttgattcaaacttaattgtcat 28298370  T
Q  226 gtcatcatgtcttgtcccatcattgta 252  Q
    |||||||||||||||||||||||||||    
T  28298371 gtcatcatgtcttgtcccatcattgta 28298397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 38471726 - 38471591
Alignment:
Q  26 caagcgtcgagcctattaaggcgtagatgttggttctttgtttgattgacccatacgagtccacagtccaccaagcgtcgag-gtgttaaggcatagatg 124  Q
    |||||||| ||||| |||||| ||||| |||  |||||| | || | ||||||||| ||| | |||||||||||| ||||||  ||||||||| |||| |    
T  38471726 caagcgtcaagcctgttaaggtgtagacgttttttctttatctggtcgacccataccagttcgcagtccaccaagtgtcgagcctgttaaggcgtagacg 38471627  T
Q  125 tttgttctctatgcagtcgacccataccagtccact 160  Q
    |||||||| | | |  |||||||||| |||||||||    
T  38471626 tttgttcttttttcgatcgacccatatcagtccact 38471591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 31678549 - 31678502
Alignment:
Q  204 ttgattcaaacttaattgtcatgtcatcatgtcttgtcccatcattgta 252  Q
    |||||||||||| | ||||||||||| ||||||||||||||||| ||||    
T  31678549 ttgattcaaact-atttgtcatgtcaccatgtcttgtcccatcaatgta 31678502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 12600032 - 12600114
Alignment:
Q  171 taactagttcgtaaccgggttatcaacaccgacttgattcaaacttaattgtcatgtcatcatgtcttgtcccatcattgtatc 254  Q
    ||||||||||||||||| ||| | ||||| |  |||||||||||||| ||||| | | ||||||||||||||||||||||||||    
T  12600032 taactagttcgtaaccgagttgtgaacactggtttgattcaaacttatttgtccttt-atcatgtcttgtcccatcattgtatc 12600114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 12599790 - 12599849
Alignment:
Q  74 acccatacgagtccacagtccaccaagcgtcgag-gtgttaaggcatagatgtttgttct 132  Q
    |||||| | |||||||||||||||||||||| ||  |||||||||||||| |||||||||    
T  12599790 acccatgccagtccacagtccaccaagcgtcaagcctgttaaggcatagacgtttgttct 12599849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 45108353 - 45108460
Alignment:
Q  26 caagcgtcgagcctattaaggcgtagatgttggttctttgtttgattgacccatacgagtccacagtccaccaagcgtcgag-gtgttaaggcatagatg 124  Q
    |||||||| || || |||||| ||||| ||| ||||||| || ||||||||||||| |||||| ||||||||||||||| ||  ||||||||  |||| |    
T  45108353 caagcgtcaaggctgttaaggtgtagacgtttgttctttattcgattgacccatactagtccatagtccaccaagcgtcaagcctgttaaggtgtagacg 45108452  T
Q  125 tttgttct 132  Q
    ||||||||    
T  45108453 tttgttct 45108460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 25057240 - 25057320
Alignment:
Q  78 atacgagtccacagtccaccaagcgtcgagg-tgttaaggcatagatgtttgttctctatgcagtcgacccataccagtcca 158  Q
    |||| ||||||||||||| |||| ||| ||  |||||| ||||||| |||||| |||||| |||||||||||||||||||||    
T  25057240 ataccagtccacagtccatcaagtgtcaagcctgttaaagcatagacgtttgt-ctctatccagtcgacccataccagtcca 25057320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 25242885 - 25242808
Alignment:
Q  83 agtccacagtccaccaagcgtcgagg-tgttaaggcatagatgtttgttctctatgcagtcgacccataccagtccac 159  Q
    |||||||||||||||||||||| ||  ||||||||| |||| ||||||||| ||  | ||||||||||||| ||||||    
T  25242885 agtccacagtccaccaagcgtcaagcctgttaaggcgtagacgtttgttctttacccggtcgacccataccggtccac 25242808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 14487113 - 14487190
Alignment:
Q  171 taactagttcgtaaccgggttatcaacaccgacttgattcaaacttaattgtcatgtcatcatgtcttgtcccatcatt 249  Q
    |||||||||||| |||| ||| | |||||  | |||||||||||||| ||||| | | |||||||||||||||||||||    
T  14487113 taactagttcgtgaccgagttgtaaacactaatttgattcaaacttatttgtcct-ttatcatgtcttgtcccatcatt 14487190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 14513594 - 14513688
Alignment:
Q  74 acccatacgagtccacagtccaccaagcgtcgag-gtgttaaggcatagatgtttgttctct-atgcagtcgacccataccagtccactgtccac 166  Q
    |||||| | |||||||||||||||||||||| ||  ||||||||| |||| ||||||||| | || | ||||| | |||||||||||| ||||||    
T  14513594 acccatgctagtccacagtccaccaagcgtcaagcctgttaaggcgtagacgtttgttctttaatccggtcgatctataccagtccacagtccac 14513688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 14513764 - 14513844
Alignment:
Q  171 taactagttcgtaaccgggttatcaacaccgacttgattcaaacttaattgtcatgtcatcatgtcttgtcccatcattgta 252  Q
    ||||||| ||||||||| ||| | ||||| |  | |||||||||||| ||||| | | ||||||||||||||||||||||||    
T  14513764 taactagctcgtaaccgagttgtaaacactggttggattcaaacttatttgtccttt-atcatgtcttgtcccatcattgta 14513844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University