View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_144 (Length: 257)
Name: NF11171A_low_144
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_144 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 38931793 - 38932042
Alignment:
| Q |
3 |
ataatactaagacctcctttaacatgtataatttggtgctttctatgttcttcatctggcgattgaagctttctaattatactttctttcactttcaaaa |
102 |
Q |
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| T |
38931793 |
ataatactaagacctcctttaacatgtataatttggtgctttctatgttgttcatcttgagattgaagctttctaattatactttctttcactttcaaaa |
38931892 |
T |
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| Q |
103 |
cttgtcccaagaaacgtgaatcaaaaccactgaacatgttgttagtttcttcttctttatcaccacgctttctaccactctgttttactggattcccggc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
38931893 |
cttgtcccaagaaacgtgaatcaaaaccactgaacatgttgttagtttcttcttctttatcaccacgctttcttccactctgttttactggattcccagc |
38931992 |
T |
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| Q |
203 |
tagataaaatctctacatgacatgacatgaataaaaattgaatcatttatatata |
257 |
Q |
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|||||||||||||| |||| ||||||||||||| ||||| ||||||||||| |
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| T |
38931993 |
tagataaaatctct-----acatcacatgaataaaaaatgaatgatttatatata |
38932042 |
T |
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