View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_147 (Length: 255)
Name: NF11171A_low_147
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_147 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 48993744 - 48993500
Alignment:
| Q |
1 |
ggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaattcctataa |
100 |
Q |
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| T |
48993744 |
ggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaattcctataa |
48993645 |
T |
|
| Q |
101 |
caggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccctagaataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48993644 |
caggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccctagtataag |
48993545 |
T |
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| Q |
201 |
catcacccaaggcaccattgcacctgccaaaatttccaaactatc |
245 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48993544 |
catcacacaaggcaccattgcacctgccaaaatttccaaactatc |
48993500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 22623998 - 22624230
Alignment:
| Q |
13 |
tgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaattcctataacaggaagcacca |
112 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||| ||||| | ||||| | ||| |||||| ||||| || | |||||| ||||||| |
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| T |
22623998 |
tgcaacaaaagcacaaatctaaacatagcatcattttcgaccaagaaatttagcttattcgacaaagcaacaatcccaataccaagaacaggtagcacca |
22624097 |
T |
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| Q |
113 |
caagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccctagaataagcatcacccaagg |
212 |
Q |
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||||||||||||| || ||||| |||||| ||| ||||||| | || ||||||||||||||||| ||||||||||||| ||||||||||| |||| |
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| T |
22624098 |
agagtcttgccacaacaataccaatagtagttctaagtccaagtctagactcatttggtccttcagcaagcataccccctaatataagcatcacagaagg |
22624197 |
T |
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| Q |
213 |
caccattgcacctgccaaaatttccaaactatc |
245 |
Q |
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|||||||||||| | ||||| || |||||||| |
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| T |
22624198 |
caccattgcaccacctaaaatctctaaactatc |
22624230 |
T |
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