View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_149 (Length: 254)
Name: NF11171A_low_149
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_149 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 43066784 - 43066712
Alignment:
| Q |
44 |
aaggaagtattcatgcacttttatctacgtattaaatcaagtcatcacgtatatgagatattcttggtatata |
116 |
Q |
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| T |
43066784 |
aaggaagtattcatgcacttttatctacgtattaaatcaagtcatcacgtatatgagatattcttcgtatata |
43066712 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 43066482 - 43066429
Alignment:
| Q |
113 |
tataaataaagtgttgagaatcctgtttatttttagttgtacattttaataaac |
166 |
Q |
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| T |
43066482 |
tataaataaagtgttgagaatcctgtttatttttagttgtgcattttaataaac |
43066429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 43065898 - 43065843
Alignment:
| Q |
193 |
taatcgcaagatccagtatatttcttttttactcttgcaagatccagtattattta |
248 |
Q |
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| T |
43065898 |
taatcgcaagatccagtatatttcttttttactctcgcaagatccattattattta |
43065843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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