View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_161 (Length: 249)
Name: NF11171A_low_161
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_161 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 21149071 - 21149309
Alignment:
| Q |
2 |
tcattttagttgcttccttgtatgcaacttcacgcatcacacatcatcgacacaatccaacaaatttttcaccaaatcaacgagcagaaaaactcattag |
101 |
Q |
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| T |
21149071 |
tcattttattttcttccttgtatgcaacttcacgcatcacacatcatcgacataatccaacaagtttttcaccaaatcaacgagcagaaaagctcattag |
21149170 |
T |
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| Q |
102 |
aagccttaacttattcccaaagaatccggttaagatgatacatggtcattctgtccttgatgattttgtccctggaaagatcgtggagaaaaagttctcg |
201 |
Q |
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| T |
21149171 |
aagccttaacttattcccaaagaatccggttaagatgatacatggtcattctgtccttgatgattttgtccctggaaagatcgtggagaaaaagttctcg |
21149270 |
T |
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| Q |
202 |
ttttttggtcattctgatgggctttctattgatattctt |
240 |
Q |
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| T |
21149271 |
ttttttggtcattctgatgggctttctattgataatctt |
21149309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 21143320 - 21143491
Alignment:
| Q |
62 |
caaatttttcaccaaatcaacgagcagaaaaactcattagaagccttaacttattcccaaagaatccggttaagatgatacatggtcatt-ctgtccttg |
160 |
Q |
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| T |
21143320 |
caaaattttcaccaaaccaacgagctgaaaagcttataaaaagctttaacttattgccaaaggatccagttaatataattcatggtgatcactcta-ttg |
21143418 |
T |
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| Q |
161 |
atgattttgtccctggaaagatcgtggagaaaaagttctcgttttttggtcattctgatgggctttctattga |
233 |
Q |
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| T |
21143419 |
atcattttgtccctggaaaactcgtcgagaagaagttctcgttttttagtgattctaatggtccttctattga |
21143491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 233
Target Start/End: Original strand, 21123402 - 21123568
Alignment:
| Q |
67 |
ttttcaccaaatcaacgagcagaaaaactcattagaagccttaacttattcccaaagaatccggttaagatgatacatggtcattctgtccttgatgatt |
166 |
Q |
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|||||||||||||||| ||| ||||| || || |||||| | ||||||||||||||| | | ||||| | || |||||| || | |||||| ||| |
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| T |
21123402 |
ttttcaccaaatcaacaagctgaaaagcttataagaagcttcaacttattcccaaagcaatcagttaatgtaattcatggtgatcattctcttgatcatt |
21123501 |
T |
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| Q |
167 |
ttgtccctggaaagatcgtggagaaaaagttctcgttttttggtcattctgatgggctttctattga |
233 |
Q |
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| T |
21123502 |
ttctacccggaaagatcgtcgagaagaagttctcgtttttcggtgattctggtggtccttctattga |
21123568 |
T |
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