View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_165 (Length: 248)
Name: NF11171A_low_165
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_165 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 3685958 - 3686199
Alignment:
| Q |
7 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaact |
106 |
Q |
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| T |
3685958 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttttaacacatacacactgtgatttccgctcattcatgaact |
3686057 |
T |
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| Q |
107 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataacatatga |
206 |
Q |
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| T |
3686058 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaaaaaaatatga |
3686157 |
T |
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| Q |
207 |
cagttatgttagggagaaaagaaaaaagaaagtggttacttg |
248 |
Q |
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| T |
3686158 |
cagttatgttagggagaaaagaaaaaagaaagtggttacttg |
3686199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 3693725 - 3693925
Alignment:
| Q |
8 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaact |
106 |
Q |
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| T |
3693725 |
cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggtttcttataacacatacacactgtgatttccgctcattcctgaacc |
3693824 |
T |
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| Q |
107 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataacatatga |
206 |
Q |
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| T |
3693825 |
atacactgcttcttcctttataattacaacacgtatcgattcgggaagatcatgatgaggtgtgtttttgataaacaacagtactagaaataaaatatga |
3693924 |
T |
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| Q |
207 |
c |
207 |
Q |
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| T |
3693925 |
c |
3693925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 3679213 - 3679409
Alignment:
| Q |
26 |
aacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctt |
124 |
Q |
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| T |
3679213 |
aacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-ctt |
3679311 |
T |
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| Q |
125 |
tataattaccac----ac---gtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaat-aacatatgacagttatg |
214 |
Q |
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| T |
3679312 |
aataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgataaatagcagtactagaaatgaaaatatgacagttatg |
3679409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 3675532 - 3675713
Alignment:
| Q |
8 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaacta |
107 |
Q |
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| T |
3675532 |
cgaagaatatagatcacgaacgcatcacaaactgatgtggttataagt----------tataacacttacgtgctgtcatttccgctcattccagaacta |
3675621 |
T |
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| Q |
108 |
tacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataa |
199 |
Q |
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| T |
3675622 |
tacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgagatgtgttcttgataaatagtagtactagaaataa |
3675713 |
T |
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