View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_168 (Length: 247)
Name: NF11171A_low_168
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_168 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 3586705 - 3586866
Alignment:
| Q |
22 |
ggacatgcttattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttctt |
121 |
Q |
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| T |
3586705 |
ggacatgcttattcttcttaactgttcccgcattttctacatgtttatcttaact-ttcccgcattttttatttgcctatatatataagttattcttctt |
3586803 |
T |
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| Q |
122 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggta |
184 |
Q |
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| T |
3586804 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttttcagatctgcaggta |
3586866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 9789750 - 9789599
Alignment:
| Q |
33 |
ttcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttccca |
132 |
Q |
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| T |
9789750 |
ttcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttccca |
9789651 |
T |
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| Q |
133 |
catctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggta |
184 |
Q |
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| T |
9789650 |
catatcttcaacctagctgctgctgttgtcagacttttcagatctacaggta |
9789599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 44504580 - 44504713
Alignment:
| Q |
44 |
tgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttcccacatctcttcaa |
143 |
Q |
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| T |
44504580 |
tgttcccgcattttctacatgtttatctcaactgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttcccacatctcttcaa |
44504679 |
T |
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| Q |
144 |
cctagctgctgctgttgtcagacttctcagatct |
177 |
Q |
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| T |
44504680 |
cttagctgctgctgttgtcagacttttcagatct |
44504713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 31678513 - 31678598
Alignment:
| Q |
99 |
tatagatataagttatttttcttaaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggta |
184 |
Q |
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| T |
31678513 |
tatatatataagttattcttcttaaccgttcccacatcttttcaacctagctgctgctgttgtcagacttttcagatctacaggta |
31678598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 31678375 - 31678441
Alignment:
| Q |
22 |
ggacatgcttattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattt |
88 |
Q |
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| T |
31678375 |
ggacatgcttatgcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattt |
31678441 |
T |
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