View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_17 (Length: 442)
Name: NF11171A_low_17
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 29092590 - 29092315
Alignment:
| Q |
13 |
tgaaattggtgaagaaaaatatttagatcagggcaattattaacacaaatgaggaagaagaaattgacataacattgaggtggtgcatcgtgctgaaata |
112 |
Q |
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| T |
29092590 |
tgaaattggtgaagaaaaatatttagatcagggcaattattaacacaaatgaggaagaagaaattgacataacattgaggtggtgcatcgtgctgaaata |
29092491 |
T |
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| Q |
113 |
aaataaatcaatgaacatgagagtttgaaaaaagttgggcgattccaaagcaaaatgcgccactactatctctatactaagatttttcnnnnnnnnnnnn |
212 |
Q |
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| T |
29092490 |
aaataaatcaatgaacatgagagtttgaaaaaagttgggcgattccaaagcaaaatgcgccactactatctctatactaagatttttcaaaaataaaaat |
29092391 |
T |
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| Q |
213 |
nnnnntctctatactaagactaagacataaagtttcatgagacatacactttgacaaatcacatcacaattatctctacaaa |
294 |
Q |
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| T |
29092390 |
aaaaatctct------agactaagacataaagtttcatgagacatacactttgacaaatcacatcacaattatctctacaaa |
29092315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 301 - 420
Target Start/End: Complemental strand, 29092240 - 29092121
Alignment:
| Q |
301 |
tacaccttgagacagaaaaaataataaagagactgatgtaataaatgtaatatgttgatgatgtgataggaagataaatatgaaaagaaaataatatatt |
400 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29092240 |
tacaccttgagacagaaaaaataataaacagaatgatgtaataaatgtaatatgttgatgatgtgataggaagataaatatgaaaagaaaataatatgtt |
29092141 |
T |
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| Q |
401 |
aaatgagtgttggaaaatta |
420 |
Q |
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| T |
29092140 |
aaatgagtgttggaaaatta |
29092121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 44278042 - 44278002
Alignment:
| Q |
334 |
tgatgtaataaatgtaatatgttgatgatgtgataggaaga |
374 |
Q |
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| T |
44278042 |
tgatgtaatatatgtgatatgttgatgatgtgataagaaga |
44278002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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