View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_176 (Length: 245)

Name: NF11171A_low_176
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_176
NF11171A_low_176
[»] chr1 (2 HSPs)
chr1 (142-219)||(16146488-16146565)
chr1 (1-66)||(16146580-16146645)
[»] chr2 (1 HSPs)
chr2 (142-201)||(40119334-40119393)


Alignment Details
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 16146565 - 16146488
Alignment:
Q  142 tcaagacttttggagataagcttttgtttgtaggtggacaaaggggtccagaaggtgaagaagctgtagtagagtatt 219  Q
    |||||| || |||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||    
T  16146565 tcaagatttgtggagataagctgttgtttgtaggtggacaaagtggtccggaaggggaagaagctgtagtagtgtatt 16146488  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16146645 - 16146580
Alignment:
Q  1 accacttcttgctgtacttaacgattggttgtacacaattgaacgtttaaatagcatgatcaagaa 66  Q
    ||||||| |||||||| |||| |||| ||||||  ||||||||||||||| |||||||||||||||    
T  16146645 accacttgttgctgtatttaatgattagttgtaagcaattgaacgtttaactagcatgatcaagaa 16146580  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 40119334 - 40119393
Alignment:
Q  142 tcaagacttttggagataagcttttgtttgtaggtggacaaaggggtccagaaggtgaag 201  Q
    ||||| ||| ||||||||| |||||| | |||||||||||||||||||||||||||||||    
T  40119334 tcaaggcttgtggagataaacttttggtcgtaggtggacaaaggggtccagaaggtgaag 40119393  T

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