View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_177 (Length: 244)
Name: NF11171A_low_177
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_177 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 22679189 - 22679046
Alignment:
| Q |
22 |
ataccttcagaattaattggtgtgtatgaaaaagtcaaacaacaaccaacatcttctttggttaaggtataatgtgtactagatgacaccgacataaagc |
121 |
Q |
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| T |
22679189 |
ataccttcagaattaattggtgtgtatgaaaaagtcaaacaacaaccaacatcttctttggttaaggtataatgtgtaccagatgacaccgacataaagc |
22679090 |
T |
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| Q |
122 |
cctctctgcgtagatttatcataatcaataagagcttagtgaat |
165 |
Q |
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| T |
22679089 |
cctctctgcgtagatttatcataatcaataagagcttagtgaat |
22679046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 22680482 - 22680410
Alignment:
| Q |
22 |
ataccttcagaattaattggtgtgtatgaaaaagtcaaacaacaaccaacatcttctttggttaaggtataat |
94 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
22680482 |
ataccttcagaattaattggtgtgtatgcaaaagtcaaacaacaaccaacatcttcttcggtcaaggtataat |
22680410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 21227251 - 21227321
Alignment:
| Q |
22 |
ataccttcagaattaattggtgtgtatgaaaaagtcaaacaacaaccaacatcttctttggttaaggtata |
92 |
Q |
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||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21227251 |
ataccttcaaaattaattggtatgtatacaaaagtcaaacaacaaccaacatcttctttggtcaaggtata |
21227321 |
T |
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