View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_180 (Length: 244)
Name: NF11171A_low_180
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_180 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 1140741 - 1140975
Alignment:
| Q |
10 |
cagagagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaat |
109 |
Q |
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| T |
1140741 |
cagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaat |
1140840 |
T |
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| Q |
110 |
ctacacttatctaatgaactcaaaacaaacatttgtggaagccattgatataccaagtgatgtaggacgcggaagatataaccgtagaatgacaccattg |
209 |
Q |
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| T |
1140841 |
ctacacttatctaatgaactcaaaacaaacatttgtggaagcaattgatataccaagtgatgtaggacgtggaagatataaccgtagaatgagaccattg |
1140940 |
T |
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| Q |
210 |
attcacctttcacaatggcgtaaagtggctcaatg |
244 |
Q |
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| T |
1140941 |
attcaactttcacaatggagaaaaggggctcaatg |
1140975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 1137280 - 1137514
Alignment:
| Q |
10 |
cagagagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaat |
109 |
Q |
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| T |
1137280 |
cagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtcctactttcagaacattgcataccattgttcaatttcttcacaat |
1137379 |
T |
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| Q |
110 |
ctacacttatctaatgaactcaaaacaaacatttgtggaagccattgatataccaagtgatgtaggacgcggaagatataaccgtagaatgacaccattg |
209 |
Q |
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| T |
1137380 |
ctacacttatctaatgaaatcaaaacaaacatttgtggaagctaatgatattccaggtcgtgtaggacgtgtaagatataaccgtagaatgtgtccattg |
1137479 |
T |
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| Q |
210 |
attcacctttcacaatggcgtaaagtggctcaatg |
244 |
Q |
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| T |
1137480 |
attcaactttcacaatggagaaaaggggctcaatg |
1137514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 22841770 - 22841664
Alignment:
| Q |
24 |
ctagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaatctacacttatctaa |
123 |
Q |
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| T |
22841770 |
ctagcaaacgcgcttctcgatttctcaaaccaacgattcgttctcatatcagaatcatgcataccactcttcaacttctcaacagtctactcttatctaa |
22841671 |
T |
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| Q |
124 |
tgaactc |
130 |
Q |
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| T |
22841670 |
tgaactc |
22841664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 54474826 - 54474678
Alignment:
| Q |
12 |
gagagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaatct |
111 |
Q |
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| T |
54474826 |
gagaaacgtctactagcaaatgcattgctcgatttctcaaaccaacgttttgtactactttcagaatcatgcataccattgttcaatttctccacaatat |
54474727 |
T |
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| Q |
112 |
acacttatctaatgaactcaaaacaaacatttgtggaagccattgatat |
160 |
Q |
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| T |
54474726 |
acacttatctaatgaactcaagactatcatttgtggaagctaatgatat |
54474678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 31266879 - 31266737
Alignment:
| Q |
10 |
cagagagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaat |
109 |
Q |
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| T |
31266879 |
cagaaagacgtttactagcaaatgcattgcttgatttctcaaaccaacgttttgtactactttcagaatcatgcataccattgttcaatttctctacaat |
31266780 |
T |
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| Q |
110 |
ctacacttatctaatgaactcaaaacaaacatttgtggaagcc |
152 |
Q |
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| T |
31266779 |
ctacacttacctaatgaactcagagaaaacctttgtggaagcc |
31266737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 48323683 - 48323540
Alignment:
| Q |
10 |
cagagagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctccacaat |
109 |
Q |
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| T |
48323683 |
cagagaggcgtctactagcaaatgcattgcttgatttctcaaaccaaagatttgtactactttcagaatcatgtataccattgttcaatttctccacaat |
48323584 |
T |
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| Q |
110 |
ctacacttatctaatgaactcaaaacaaacatttgtggaagcca |
153 |
Q |
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| T |
48323583 |
ttatacttatctaatgaactcaaatgaaacctttgtggaagcca |
48323540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 395619 - 395573
Alignment:
| Q |
31 |
atgcactgcttgatttctcaaaccaacgttttgtactactttcagaa |
77 |
Q |
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| T |
395619 |
atgcactacttgatttatcaaaccaacgttttatactactttcagaa |
395573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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