View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_183 (Length: 243)

Name: NF11171A_low_183
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_183
NF11171A_low_183
[»] chr2 (13 HSPs)
chr2 (19-230)||(8579554-8579765)
chr2 (19-80)||(9061358-9061419)
chr2 (20-89)||(9364511-9364580)
chr2 (19-89)||(7115835-7115905)
chr2 (19-89)||(9284380-9284450)
chr2 (111-168)||(9291899-9291956)
chr2 (19-88)||(10335738-10335807)
chr2 (110-230)||(10347740-10347860)
chr2 (109-152)||(9274475-9274518)
chr2 (18-80)||(8573725-8573787)
chr2 (19-80)||(9291804-9291865)
chr2 (109-161)||(8573641-8573693)
chr2 (109-221)||(9061217-9061329)
[»] chr3 (2 HSPs)
chr3 (19-230)||(39427495-39427718)
chr3 (109-170)||(37462443-37462504)
[»] chr1 (4 HSPs)
chr1 (19-81)||(29423147-29423209)
chr1 (19-89)||(29453494-29453564)
chr1 (19-81)||(29467978-29468040)
chr1 (22-81)||(29443519-29443578)
[»] chr5 (2 HSPs)
chr5 (107-166)||(36224364-36224423)
chr5 (32-88)||(36224295-36224351)
[»] chr7 (3 HSPs)
chr7 (22-80)||(45243555-45243613)
chr7 (22-80)||(45230293-45230351)
chr7 (112-161)||(45243656-45243705)
[»] chr4 (2 HSPs)
chr4 (107-230)||(561174-561297)
chr4 (20-85)||(561066-561131)
[»] chr8 (1 HSPs)
chr8 (19-76)||(41966911-41966968)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 8579765 - 8579554
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagatcaccttttacttccaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8579765 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagattaccttttacttccaacag 8579666  T
Q  119 aaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccgactatct 218  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8579665 aactttacttctatcactagaataacacaaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatct 8579566  T
Q  219 ctacctccatat 230  Q
    |||  |||||||    
T  8579565 ctaaatccatat 8579554  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 9061419 - 9061358
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    ||||||||||||||| |||| || |||||| |||||| ||||||||||||||||||||||||    
T  9061419 aattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttc 9061358  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 9364511 - 9364580
Alignment:
Q  20 attaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    ||||||||||||| |||||| |||||| | |||||| |||||||| ||||||||||||||||||| ||||    
T  9364511 attaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaacagcttcttacgatct 9364580  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 7115905 - 7115835
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    ||||||||||||||| ||||||| |||||| ||| || || | ||||||||||| ||||||| ||||||||    
T  7115905 aattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcctacaatct 7115835  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 9284450 - 9284380
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    ||||||||||||||| |||| || ||||||  ||||| || | ||||||||||| ||||||||||||||||    
T  9284450 aattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttcttacaatct 9284380  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 9291899 - 9291956
Alignment:
Q  111 tccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaag 168  Q
    ||||||||||  ||||||| ||| |||||||||||||||||| |||||||| ||||||    
T  9291899 tccaacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaag 9291956  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 10335738 - 10335807
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatc 88  Q
    ||||||||||||||| |||| || ||| || |||||| || | |||||||||||||| ||||||||||||    
T  10335738 aattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttcttacaatc 10335807  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 10347740 - 10347860
Alignment:
Q  110 ttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacac 209  Q
    |||||||||||  ||||||| |||||||||||||||||  ||| ||||  || ||||||||  || ||| ||||| ||  | | |||||| | |||||||    
T  10347740 ttccaacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacac 10347839  T
Q  210 cgactatctctacctccatat 230  Q
    | ||||||||||| |||||||    
T  10347840 caactatctctacatccatat 10347860  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 9274475 - 9274518
Alignment:
Q  109 cttccaacagaaatttacttctatcactagaataacataaaggc 152  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||    
T  9274475 cttccaacagaaccttacttccatcactagaataacataaaggc 9274518  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 8573787 - 8573725
Alignment:
Q  18 caattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    |||||||||||||||| |||| || | |||| |||||| || | |||||||||||||||||||    
T  8573787 caattaggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttc 8573725  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 9291804 - 9291865
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    ||||||||||||||| |||| || ||| || |||||| || | |||||||||||||||||||    
T  9291804 aattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 9291865  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 8573693 - 8573641
Alignment:
Q  109 cttccaacagaaatttacttctatcactagaataacataaaggcttcaaagat 161  Q
    ||||||||||||  ||||||| |||||||||||||| ||||||| || |||||    
T  8573693 cttccaacagaaccttacttccatcactagaataacctaaaggcctcgaagat 8573641  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 9061329 - 9061217
Alignment:
Q  109 cttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttaca 208  Q
    ||||||||||||  |||| || |||||||||||||||||| ||| ||||| |   |||||||  |||||| ||||| |   | |||||||| | ||||||    
T  9061329 cttccaacagaaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaaaagtttaca 9061230  T
Q  209 ccgactatctcta 221  Q
    || ||||||||||    
T  9061229 ccaactatctcta 9061217  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 39427495 - 39427718
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttctt---acaatctctatagagatcacc------ttttac 109  Q
    |||||||||||| | ||||| | |||||||  | ||||||||||| ||||||||||||||||||   |  ||| || | || ||||||      ||||||    
T  39427495 aattaggaattcttggaacataggtaactttataacttttgagataataccaaaacagcttcttcttaggatcactcttgaaatcacccctaaattttac 39427594  T
Q  110 ttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcc---tcaaaagtaaacaattta 206  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||  | ||||||  |||||| ||| | |||    |||||||||||||||||    
T  39427595 ttccaacagaactttacttctatcactggaataacataaaggcttcaaagacattaaaggtgaattgaaacaccattcccctacaaaagtaaacaattta 39427694  T
Q  207 caccgactatctctacctccatat 230  Q
    |||| ||||| ||||  |||||||    
T  39427695 caccaactatatctatatccatat 39427718  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 37462443 - 37462504
Alignment:
Q  109 cttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggt 170  Q
    ||||||||| ||  ||||||| |||||||||||||||||||||| |||||||| ||||||||    
T  37462443 cttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggt 37462504  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 29423147 - 29423209
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 81  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  29423147 aattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttct 29423209  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 29453564 - 29453494
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 89  Q
    ||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||    
T  29453564 aattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttctcacaatct 29453494  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 29468040 - 29467978
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 81  Q
    ||||||||||||||| |||| || |||| | |||||| ||||||||||||||||||| |||||    
T  29468040 aattaggaattccttcaacataattaacatgttcactcttgagatcataccaaaacaacttct 29467978  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 29443578 - 29443519
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 81  Q
    |||||||||||| |||| || ||||   |||||| |||||||||||||||||||||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 29443519  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 36224364 - 36224423
Alignment:
Q  107 tacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaa 166  Q
    |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||    
T  36224364 tacttccaacagaactttacttctatcactggaataacatgaaggcttcaaagatatcaa 36224423  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 36224295 - 36224351
Alignment:
Q  32 ttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatc 88  Q
    ||||||||| |||||||| | ||||||||||| ||||||||||  ||||||| ||||    
T  36224295 ttgaacacaggtaacttcataacttttgagataataccaaaactccttcttagaatc 36224351  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 45243555 - 45243613
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    ||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||    
T  45243555 taggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttc 45243613  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 45230293 - 45230351
Alignment:
Q  22 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 80  Q
    |||||||||||||||||  |||||||| |||||| |||| |||||||||||||||||||    
T  45230293 taggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 45243656 - 45243705
Alignment:
Q  112 ccaacagaaatttacttctatcactagaataacataaaggcttcaaagat 161  Q
    ||||||||| |||||||| |||||| ||||||||||||||| ||||||||    
T  45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaagat 45243705  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 561174 - 561297
Alignment:
Q  107 tacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaattta 206  Q
    |||||||||||||| |||||||||||||| |||||||| |||||||||| | | | | |||||| || ||||  ||   ||||| ||||||||||||  |    
T  561174 tacttccaacagaactttacttctatcaccagaataacctaaaggcttccatggtgtaaaaggtctactgaaaaacacttcctccaaagtaaacaataca 561273  T
Q  207 caccgactatctctacctccatat 230  Q
    |||| ||||||||||  |||||||    
T  561274 caccaactatctctaaatccatat 561297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 561066 - 561131
Alignment:
Q  20 attaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttaca 85  Q
    ||||||||||||| ||||||| ||| ||  || ||||||||||||||||||||||| ||| |||||    
T  561066 attaggaattcctggaacacaggtagctcttttacttttgagatcataccaaaacaactttttaca 561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 41966968 - 41966911
Alignment:
Q  19 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacag 76  Q
    ||||||||||||||| |||| |||||| || |||||| || | |||||||||||||||    
T  41966968 aattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 41966911  T

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