View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_187 (Length: 242)
Name: NF11171A_low_187
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_187 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 42215276 - 42215046
Alignment:
| Q |
12 |
tctgagtagaacttgacctagatctcttaataaaaaggttttgtatttgaacctgatcaaacagattattcaacagaaattagacatttacaattcgcac |
111 |
Q |
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| T |
42215276 |
tctgagtagaacttgacccagatcccttaataaaaaggttttgtatttgaatctggtcaaacagattattcaacagaaattagacatttacaattcgaac |
42215177 |
T |
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| Q |
112 |
caataacattattacaaaagtaattgtattcaaacaaatatttcccccatgatagacaaaggctgagttaaattaacctatatataccaccatgctctaa |
211 |
Q |
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| T |
42215176 |
caataagattattacaaaagtaattgtattcaaacaaatatttcccccatgatagacaaaggctgagttaaattaacctatatataccaccatgctctaa |
42215077 |
T |
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| Q |
212 |
catgcatgttcttcaattacagcctacagta |
242 |
Q |
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| T |
42215076 |
catacatgttcttcaattacagcctacagta |
42215046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 42208377 - 42208240
Alignment:
| Q |
105 |
ttcgcaccaataacattattacaaaagtaattgtattcaaacaaatatttcccccatgatagacaaaggctgagttaaattaacctatatataccaccat |
204 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208377 |
ttcgcaccaataagattattacaaaagtaattgtattcaaacaaatatttcccccatgatagacaaaggctgagttaaattaacctatatataccaccat |
42208278 |
T |
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| Q |
205 |
gctctaacatgcatgttcttcaattacagcctacagta |
242 |
Q |
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| T |
42208277 |
gctctaacatacatgttcttcaattacagcctacagta |
42208240 |
T |
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