View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_188 (Length: 242)
Name: NF11171A_low_188
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_188 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 32166999 - 32166765
Alignment:
| Q |
8 |
gatatgaaaatagaagaaatgagataatgttgttaataacctatatttgctttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32166999 |
gatatgaaaatagaagaaatgagataatgttgttaataacctatatttgctttcaggatcctgtttgtgggagtgcacattgtggcttggcaccctattg |
32166900 |
T |
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| Q |
108 |
gagcaagaagttggggaagtgtgatttaaaggcttatcaggtagtactgttatattactatcttttctattccctcattgtgattatctttgtcattgct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32166899 |
gagcaagaagttggggaagtgtgatttaaaggcttatcaggtagtactattatattactatcttttctattccctcattgtgattatctttgtcattgtg |
32166800 |
T |
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| Q |
208 |
gtactaatttttagaatacatttgttcaggcatca |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32166799 |
gtactaatttttagaatacatttgttcaggcatca |
32166765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 32156581 - 32156399
Alignment:
| Q |
58 |
tttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagttggggaagtgtgatttaaaggcttatcaggtagtactgt |
157 |
Q |
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| T |
32156581 |
tttcaggatccagtttgtgggagtgcacattgtggattggcatcctattggagcaagaaactaggaaagtgtgatttaaaggcttatcaggtagtactat |
32156482 |
T |
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| Q |
158 |
tatattactatcttttctattccctcattgtgattatctttgtcattgctgtactaatttttagaatacatttgttcaggcatca |
242 |
Q |
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| T |
32156481 |
--tattactatcttttctattccctcattatgattatttttgttattgtggtactaaattttagattacatttgttcaggcatca |
32156399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 27261956 - 27261831
Alignment:
| Q |
21 |
aagaaatgagataatgttgttaataacctatattt--gctttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagt |
118 |
Q |
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||||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
27261956 |
aagaaatgagataatgttgttgataactcatgtttactctttcaggatcctgtttgtgggagtgcacattgtggcttggcaccctattggagcgagaaac |
27261857 |
T |
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| Q |
119 |
tggggaagtgtgatttaaaggcttat |
144 |
Q |
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| T |
27261856 |
tggggaagtgtgatttaaaagcttat |
27261831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 32164152 - 32164011
Alignment:
| Q |
8 |
gatatgaaaatagaagaaatgagataatgttgttaataacctatatttgctttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattg |
107 |
Q |
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|||||||||||||||||||| ||||||| ||||| ||||| ||||||| || ||||||||||||||||||||||| || ||||||||||| ||||||| |
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| T |
32164152 |
gatatgaaaatagaagaaattagataatattgttgataactcatatttggtt-caggatcctgtttgtgggagtgcccactgtggcttggcatcctattg |
32164054 |
T |
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| Q |
108 |
gagcaagaagttggggaagtgtgatttaaaggcttatcaggta |
150 |
Q |
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| T |
32164053 |
gagcaagaagctcgaaaaatgtgatttaaaggcttatcaggta |
32164011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 27339891 - 27339752
Alignment:
| Q |
8 |
gatatgaaaatagaa-gaaatgagataatgttgttaataacctatattt--gctttcaggatcctgtttgtgggagtgcacattgtggcttggcccccta |
104 |
Q |
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||||||||||||||| ||||||||||||| ||||| ||||| || ||| ||||||||||||||||||||||| |||||||||||| ||||| ||||| |
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| T |
27339891 |
gatatgaaaatagaaagaaatgagataatattgttgataactcatgtttactctttcaggatcctgtttgtgggactgcacattgtggtttggcacccta |
27339792 |
T |
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| Q |
105 |
ttggagcaagaagttggggaagtgtgatttaaaggcttat |
144 |
Q |
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| T |
27339791 |
ttggagcgagaaactggggaagtgtgatttaaaagcttat |
27339752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 27320902 - 27320815
Alignment:
| Q |
57 |
ctttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagttggggaagtgtgatttaaaggcttat |
144 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||| |||||||||||| | || ||||||||||||||||||| |||||| |
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| T |
27320902 |
cttttaggatcctgtttgtgggactgcacattgtggcttggcaccctattggagcgaaaaactggggaagtgtgatttaaaagcttat |
27320815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 27362538 - 27362632
Alignment:
| Q |
61 |
caggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagttggggaagtgtgatttaaaggcttatcaggtagtact |
155 |
Q |
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||||||| ||| ||||| |||| |||||||| ||||| ||||||||||||||||| | || || |||||||||||||||||||||||| |||| |
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| T |
27362538 |
caggatcttgtctgtggtagtgtccattgtggtttggcatcctattggagcaagaagcttggaaaatgtgatttaaaggcttatcaggtactact |
27362632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 27333788 - 27333852
Alignment:
| Q |
86 |
attgtggcttggccccctattggagcaagaagttggggaagtgtgatttaaaggcttatcaggta |
150 |
Q |
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| T |
27333788 |
attgtagcttggcatcctattggagcaagaagctgggaaaatgtgatttaaaggcttatgaggta |
27333852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 44291818 - 44291910
Alignment:
| Q |
58 |
tttcaggatcctgtttgtgggagtgcacattgtggcttggccccctattggagcaagaagttggggaagtgtgatttaaaggcttatcaggta |
150 |
Q |
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| T |
44291818 |
tttcaggatcctgtttgtggcactgcacatttaggcatggcatcctattggagtaagaagctgggaaagtgtgatttaaaggcttaccaggta |
44291910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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