View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_19 (Length: 434)

Name: NF11171A_low_19
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_19
NF11171A_low_19
[»] chr3 (13 HSPs)
chr3 (7-434)||(5484450-5484875)
chr3 (189-434)||(5525676-5525919)
chr3 (249-434)||(5828158-5828344)
chr3 (247-434)||(5502897-5503082)
chr3 (247-431)||(5490083-5490266)
chr3 (249-434)||(5454907-5455092)
chr3 (251-434)||(20343528-20343712)
chr3 (247-418)||(5446346-5446517)
chr3 (271-418)||(5854204-5854351)
chr3 (318-434)||(5848887-5849003)
chr3 (317-430)||(5802494-5802607)
chr3 (131-195)||(5525588-5525652)
chr3 (9-69)||(5525497-5525557)
[»] chr6 (1 HSPs)
chr6 (247-418)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Original strand, 5484450 - 5484875
Alignment:
Q  7 caagtttctcgtattctttatatgatctgtagttcgaagtaaatgtcagtcaagaagcagataaagaaggaaaaaagatctatagggaaaagtgaaaaga 106  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5484450 caagtttctcgtattctttatatgatctgtaggttgaagtaaatgtcattcaagaagcagataaagaaggaaaaaagatctacagggaaaagtgaaaaga 5484549  T
Q  107 gaattattaatgccgcgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484550 gaattattaatgccacgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 5484649  T
Q  207 ctattaattaaacagttaaggtatcagtaccagttctatcacacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgt 306  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5484650 ctattaattaaacagttaaggtatcagtaccag--ctatcacacaaatgatgaaataaataaatttgtgctatatatctgactgaagagataaaatatgt 5484747  T
Q  307 ctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaacca 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||| |||||||||||||||||||||||||||||    
T  5484748 ctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatttcttgtcctacgtcaggatgttttctcatgtccacaatgttgccaaacca 5484847  T
Q  407 aagtaagcagccgctcccaccatctctg 434  Q
    |||||||||||| |||||||||||||||    
T  5484848 aagtaagcagccactcccaccatctctg 5484875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 189 - 434
Target Start/End: Original strand, 5525676 - 5525919
Alignment:
Q  189 atgttttgtaatcttttcctattaattaaacagttaaggtatcagtaccagttctatcacacaaatgatgaaataaataaatttgtgcaatatatctgac 288  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||  |||| |||||||| ||    
T  5525676 atgttttgtaatctattcctattaattaaactgttaaggtagcagtgccagttctatcacacaaatgatgaaatatataaat--gtgctatatatctaac 5525773  T
Q  289 tgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtc 388  Q
    |||| ||  |||||||||  | |||| | |||||||||||||||||||||||||  |||||||||||||||||||||   |||||||| |||||||||||    
T  5525774 tgaaaaggaaaaatatgtgataggaagttaaaataccaagttctgaagatgccaatcgtatgtaaatgtcttgtcctacgtcaggatgttttctcatgtc 5525873  T
Q  389 cacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 434  Q
    ||||||||||  |||||||||||||||||| |||||||||||||||    
T  5525874 cacaatgttgttaaaccaaagtaagcagccactcccaccatctctg 5525919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 249 - 434
Target Start/End: Complemental strand, 5828344 - 5828158
Alignment:
Q  249 acaaatgatgaa-ataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgt 347  Q
    ||||||| |||| ||| |||||||||| | ||  |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||    
T  5828344 acaaatgctgaatatatataaatttgtcctatgcatctaactgaagaggtaaaatatgtctttggaaatgaaaataccaagttcggaagatgcgagtcgt 5828245  T
Q  348 atgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 434  Q
    ||||||||||||||||||   |||||||| ||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||    
T  5828244 atgtaaatgtcttgtcctacgtcaggatgttttctcatgtccacaatattgttaaaccaaagtaagcagccactcccaccatctctg 5828158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 247 - 434
Target Start/End: Original strand, 5502897 - 5503082
Alignment:
Q  247 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 346  Q
    ||||||||| |||||||  ||||||| |||  ||||||| ||||||  || |||||||||  | | |||||||||||||||| |||||||||||||||||    
T  5502897 acacaaatggtgaaatatgtaaatttatgc--tatatctaactgaaaggacaaaatatgtaatagcaaatgaaaataccaagctctgaagatgccagccg 5502994  T
Q  347 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 434  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||    
T  5502995 tatgtaaatgtcttgtccttggtctggatgttttctcatgtcgacaatgttgtcaaaccaaagtaagcagccactcccaccatctctg 5503082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 247 - 431
Target Start/End: Original strand, 5490083 - 5490266
Alignment:
Q  247 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 346  Q
    ||||||||| |||||||  ||||||| ||| |||||||| |||||| ||| |||||||||  |  ||||||||||||||||||||||||||||||| |||    
T  5490083 acacaaatggtgaaatat-taaatttatgctatatatctaactgaaaagacaaaatatgtaataagaaatgaaaataccaagttctgaagatgccatccg 5490181  T
Q  347 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatct 431  Q
    ||||||||||||||||||||| ||  |||| |||||||||||||||||||||  ||||||||||| |||||| ||||||||||||    
T  5490182 tatgtaaatgtcttgtccttggtcttgatgttttctcatgtccacaatgttgttaaaccaaagtatgcagccactcccaccatct 5490266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 249 - 434
Target Start/End: Original strand, 5454907 - 5455092
Alignment:
Q  249 acaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgta 348  Q
    ||||||| ||||||| |||| ||| ||| |||||||| |||||| ||| |||||||||  |  |||| |||||||||||||||||||||||||| |||||    
T  5454907 acaaatggtgaaatatataagtttatgctatatatctaactgaaaagacaaaatatgtaataagaaaagaaaataccaagttctgaagatgccatccgta 5455006  T
Q  349 tgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 434  Q
    ||||||||||||||||||| ||  |||| |||||||||||||||||||||  ||||||||||| |||||| |||||| ||||||||    
T  5455007 tgtaaatgtcttgtccttggtcttgatgttttctcatgtccacaatgttgtgaaaccaaagtatgcagccactcccatcatctctg 5455092  T

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Target: chr3; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 251 - 434
Target Start/End: Original strand, 20343528 - 20343712
Alignment:
Q  251 aaatgatgaaataaat-aaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtat 349  Q
    ||||| ||||||| || ||||||||||||||||||| |||| | ||  |||| ||||  | |||||||||||||||||||||||||||||| ||||||||    
T  20343528 aaatgctgaaatatatgaaatttgtgcaatatatctaactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtat 20343627  T
Q  350 gtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 434  Q
     ||||||||||||||||| ||  |||| ||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||||    
T  20343628 ataaatgtcttgtccttggtctcgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcaaccactcccaccatctctg 20343712  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 5446346 - 5446517
Alignment:
Q  247 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 346  Q
    ||||||||| |||||||  ||||||| ||| |||||||| ||||||  || |||||||||  |   ||||||||||||||||||||||||||||||||||    
T  5446346 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccg 5446445  T
Q  347 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 418  Q
    ||||||||||||||||||||| ||  ||||  |||||||||| ||||||| | ||||||| |||||||||||    
T  5446446 tatgtaaatgtcttgtccttggtcttgatgtattctcatgtcaacaatgtcgtcaaaccagagtaagcagcc 5446517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 271 - 418
Target Start/End: Complemental strand, 5854351 - 5854204
Alignment:
Q  271 ttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatc 370  Q
    |||||| ||||||| ||||||| ||  |||| ||||  | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  5854351 ttgtgctatatatcagactgaaaaggcaaaagatgtaataggaaatgtaaataccaagttctgaagatgccagccgtatgaaaatgtcttgtccttggtc 5854252  T
Q  371 aggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 418  Q
     ||||| |||||||| || ||||||||| |||||||||||||||||||    
T  5854251 tggatgttttctcatatcaacaatgttgtcaaaccaaagtaagcagcc 5854204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 318 - 434
Target Start/End: Complemental strand, 5849003 - 5848887
Alignment:
Q  318 aaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagc 417  Q
    |||||||| |||||||||||||| || |||||||||||||||||||||   |||||||| |||||||||||||||||||||  |||||||||||||||||    
T  5849003 aaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcctatgtcaggatgttttctcatgtccacaatgttgttaaaccaaagtaagcagc 5848904  T
Q  418 cgctcccaccatctctg 434  Q
    | |||||||||||||||    
T  5848903 cactcccaccatctctg 5848887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 5802607 - 5802494
Alignment:
Q  317 gaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcag 416  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||   || ||||| ||||||||||||| ||| |||  ||||||||||||||||    
T  5802607 gaaaataccaagttctgaagatgcgagtcgtatgtaaatgtcttgtcctacgtctggatgttttctcatgtccataatattgttaaaccaaagtaagcag 5802508  T
Q  417 ccgctcccaccatc 430  Q
    || || ||||||||    
T  5802507 ccactaccaccatc 5802494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 5525588 - 5525652
Alignment:
Q  131 atgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgtttt 195  Q
    ||||||| ||| ||||  ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  5525588 atgttttgaacggtactcaattcctagaggttgattattttcagaagttggcatttatgtgtttt 5525652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 5525497 - 5525557
Alignment:
Q  9 agtttctcgtattctttatatgatctgtagttcgaagtaaatgtcagtcaagaagcagata 69  Q
    |||| ||| |||||||| |||||||||  | | |||||||||||||||||| |||||||||    
T  5525497 agttcctcttattctttttatgatctgatggttgaagtaaatgtcagtcaacaagcagata 5525557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 25809466 - 25809295
Alignment:
Q  247 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 346  Q
    ||||||||| |||||||  ||||||| ||| |||||||| ||||||  || |||||||||  |   ||||||||||||||||||||||||||||||||||    
T  25809466 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccg 25809367  T
Q  347 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 418  Q
    ||||||||||||||||||||| ||  ||||  |||||||||| ||||||| | ||||||| |||||||||||    
T  25809366 tatgtaaatgtcttgtccttggtcttgatgtattctcatgtcaacaatgtcgtcaaaccagagtaagcagcc 25809295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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