View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_194 (Length: 240)

Name: NF11171A_low_194
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_194
NF11171A_low_194
[»] chr4 (1 HSPs)
chr4 (39-167)||(1045396-1045524)
[»] chr5 (1 HSPs)
chr5 (1-46)||(7617862-7617907)
[»] chr7 (1 HSPs)
chr7 (165-207)||(18569039-18569081)
[»] chr1 (2 HSPs)
chr1 (178-215)||(24848438-24848475)
chr1 (179-215)||(24847783-24847819)
[»] chr8 (1 HSPs)
chr8 (179-215)||(4402299-4402335)
[»] chr3 (1 HSPs)
chr3 (179-215)||(4706968-4707004)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 39 - 167
Target Start/End: Complemental strand, 1045524 - 1045396
Alignment:
Q  39 tgagaagacgatgaatactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatggtaaaattaatattttattga 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1045524 tgagaagacgatgaatactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatggtaaaattaatattttattga 1045425  T
Q  139 ttgtaaataatgtaacaattttatagagt 167  Q
    |||||||||||||||||||||||||||||    
T  1045424 ttgtaaataatgtaacaattttatagagt 1045396  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7617907 - 7617862
Alignment:
Q  1 tttggcttgttttgttttgatgataaagaatatgaagatgagaaga 46  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||    
T  7617907 tttggcttgttttgttttgatgagaaagaaaatgaagatgagaaga 7617862  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 18569081 - 18569039
Alignment:
Q  165 agtgaaattaaataggtggattctagggtgaaggttctattaa 207  Q
    |||| ||||| |||||||||||||||||||||||| |||||||    
T  18569081 agtgtaattatataggtggattctagggtgaaggtcctattaa 18569039  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 24848475 - 24848438
Alignment:
Q  178 aggtggattctagggtgaaggttctattaagtgcctca 215  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  24848475 aggtggattctagggtgagggttctattaagtccctca 24848438  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 24847783 - 24847819
Alignment:
Q  179 ggtggattctagggtgaaggttctattaagtgcctca 215  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  24847783 ggtggattctagggtgagggttctattaagtccctca 24847819  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 4402335 - 4402299
Alignment:
Q  179 ggtggattctagggtgaaggttctattaagtgcctca 215  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  4402335 ggtggattctagggtgagggttctattaagtccctca 4402299  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 4707004 - 4706968
Alignment:
Q  179 ggtggattctagggtgaaggttctattaagtgcctca 215  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  4707004 ggtggattctagggtgagggttctattaagtccctca 4706968  T

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