View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_199 (Length: 236)
Name: NF11171A_low_199
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_199 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 3230820 - 3230596
Alignment:
| Q |
10 |
agatgaatatttcatgttgttaccacagctgtctacggcaaaatattaatataggatatcatttaatgtaaagtgtctatttttatttttacttaataaa |
109 |
Q |
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| T |
3230820 |
agatgaatatttcatgatgttaccacagctgtctacggcaaaatattaatataggatatcatttaatgta--gtgtctatttttatttttacttaataaa |
3230723 |
T |
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| Q |
110 |
aagttgggaaggaagaaacttttattaggtaaagtgatataaattttcattttacaaccgttttcaaaagaggggactaatgtaattttaataacttagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3230722 |
aagttgggaaggaagaaacttttattaggtaaagtgatataaattttcattttacaaccgttttcaaaagaggggactaatgtaattttaataacttagt |
3230623 |
T |
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| Q |
210 |
aggctgtcatttacagcgtcaatataa |
236 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
3230622 |
aggctgtcatttacagtgtcaatataa |
3230596 |
T |
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