View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_20 (Length: 433)
Name: NF11171A_low_20
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 77 - 255
Target Start/End: Original strand, 4119639 - 4119818
Alignment:
| Q |
77 |
aataaaacttcatata--ttttttattgaattaattcttatcaagagatatatatgaaacatcacaggcgaacgaggaaaaggcgtttgacgattcatga |
174 |
Q |
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| T |
4119639 |
aataaaacttcatatacattttttattgaattagttcttatcaagagatat--atgaaacatcacaggcgaacgaggaaaaggcatttgacgattcatga |
4119736 |
T |
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| Q |
175 |
caactctgtcgtgacattttagaagattccgatacggtggtcagagaattcagtttccttg-agtctgagatatgttaactg |
255 |
Q |
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| T |
4119737 |
caactctgtcgtgacattttagaagattctgatacagtggtcagggaattcagtttccttgaagcctgagatatgtcaactg |
4119818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 4119340 - 4119408
Alignment:
| Q |
10 |
gatgaactttgtggtgacgtttcatgagatatgatgaattgggaacatactgatcatcatagtctagaa |
78 |
Q |
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| T |
4119340 |
gatgaactttgtggtgacgtttcaggagatatgatgaattgggaacatgctgatcatcatagtctagaa |
4119408 |
T |
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