View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_200 (Length: 236)
Name: NF11171A_low_200
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_200 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 3067320 - 3067555
Alignment:
| Q |
1 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaata |
100 |
Q |
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| T |
3067320 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaata |
3067419 |
T |
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| Q |
101 |
taaacaaataataatacatgcagtcttccatacaagctagaatacattgtacttcaataaaaggctttagatgcgtataatcgttttgttgccaataagt |
200 |
Q |
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| T |
3067420 |
taaacaaataataatacatgcagtcttccatacaagctataatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagt |
3067519 |
T |
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| Q |
201 |
gccattcaaaatcttagagtagtacagatcctttgt |
236 |
Q |
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| T |
3067520 |
gccattcaaaatcttagagtagtacagatcctttgt |
3067555 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3052618 - 3052679
Alignment:
| Q |
1 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaa |
64 |
Q |
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| T |
3052618 |
attagagaataaataactattc--tatttatatagtcaagttgttgatatcatatgaaattgaa |
3052679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 6769879 - 6769824
Alignment:
| Q |
2 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
59 |
Q |
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| T |
6769879 |
ttagagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
6769824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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