View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_207 (Length: 234)

Name: NF11171A_low_207
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_207
NF11171A_low_207
[»] scaffold0016 (1 HSPs)
scaffold0016 (23-214)||(53813-54004)
[»] chr4 (2 HSPs)
chr4 (62-125)||(15707358-15707421)
chr4 (23-67)||(15707440-15707484)
[»] scaffold0642 (2 HSPs)
scaffold0642 (62-125)||(4102-4165)
scaffold0642 (23-67)||(4184-4228)
[»] scaffold0345 (2 HSPs)
scaffold0345 (62-125)||(14014-14077)
scaffold0345 (23-67)||(14096-14140)
[»] scaffold0105 (2 HSPs)
scaffold0105 (62-125)||(24904-24967)
scaffold0105 (23-67)||(24841-24885)
[»] scaffold1526 (2 HSPs)
scaffold1526 (70-125)||(1249-1304)
scaffold1526 (23-67)||(1173-1217)
[»] chr8 (2 HSPs)
chr8 (62-125)||(44495504-44495567)
chr8 (23-64)||(44495589-44495630)
[»] chr2 (2 HSPs)
chr2 (70-125)||(3378229-3378284)
chr2 (23-67)||(3378316-3378360)
[»] chr6 (1 HSPs)
chr6 (126-210)||(21221835-21221922)


Alignment Details
Target: scaffold0016 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 53813 - 54004
Alignment:
Q  23 aagaacgaagccactcaccgctctagagtgaattcgtggatgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagt 122  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53813 aagaacgaagccactcaccgctctggagtgaattcatggatgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagt 53912  T
Q  123 aagtattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgttttgatcctctttggtaatttggtcagtact 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53913 aagtattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgttttgatcctctttggtaattttgtcagtact 54004  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 15707421 - 15707358
Alignment:
Q  62 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707421 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 15707358  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 15707484 - 15707440
Alignment:
Q  23 aagaacgaagccactcaccgctctagagtgaattcgtggatgggt 67  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||    
T  15707484 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 15707440  T

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Target: scaffold0642 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 4165 - 4102
Alignment:
Q  62 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 125  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4165 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 4102  T

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Target: scaffold0642; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 4228 - 4184
Alignment:
Q  23 aagaacgaagccactcaccgctctagagtgaattcgtggatgggt 67  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||    
T  4228 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 4184  T

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Target: scaffold0345 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 14077 - 14014
Alignment:
Q  62 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 125  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14077 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 14014  T

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Target: scaffold0345; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 14140 - 14096
Alignment:
Q  23 aagaacgaagccactcaccgctctagagtgaattcgtggatgggt 67  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||    
T  14140 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 14096  T

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Target: scaffold0105 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 24904 - 24967
Alignment:
Q  62 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 125  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24904 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 24967  T

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Target: scaffold0105; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 24841 - 24885
Alignment:
Q  23 aagaacgaagccactcaccgctctagagtgaattcgtggatgggt 67  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||    
T  24841 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 24885  T

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Target: scaffold1526 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 1249 - 1304
Alignment:
Q  70 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1249 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 1304  T

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Target: scaffold1526; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 1173 - 1217
Alignment:
Q  23 aagaacgaagccactcaccgctctagagtgaattcgtggatgggt 67  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||    
T  1173 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 1217  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 44495567 - 44495504
Alignment:
Q  62 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 125  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44495567 atgggtatgaatggagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 44495504  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 44495630 - 44495589
Alignment:
Q  23 aagaacgaagccactcaccgctctagagtgaattcgtggatg 64  Q
    |||||||||||||||||||| ||| |||||||||| ||||||    
T  44495630 aagaacgaagccactcaccgatctggagtgaattcatggatg 44495589  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 3378284 - 3378229
Alignment:
Q  70 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378284 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 3378229  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 3378360 - 3378316
Alignment:
Q  23 aagaacgaagccactcaccgctctagagtgaattcgtggatgggt 67  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||    
T  3378360 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 3378316  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 21221922 - 21221835
Alignment:
Q  126 tattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgtt---ttgatcctctttggtaatttggtcag 210  Q
    |||| |||||||||||||||||||||||||||||||| || |||||||| || | ||||   ||||||||||||||||||||| ||||    
T  21221922 tattatatcactattaggagcaacatcatcagccacagataattcctattttcagtgttttcttgatcctctttggtaatttgttcag 21221835  T

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