View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_208 (Length: 234)
Name: NF11171A_low_208
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_208 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 38483880 - 38483684
Alignment:
| Q |
18 |
tcattccaaccaacaaaaaccgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgaccgccgttcaa |
117 |
Q |
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| T |
38483880 |
tcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaa |
38483781 |
T |
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| Q |
118 |
caaaacctgtcttcccaacacgatttccatcgaaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata |
214 |
Q |
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| T |
38483780 |
caaaacccgtcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata |
38483684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 30118257 - 30118163
Alignment:
| Q |
43 |
cttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgaccgccgttcaacaaaacctgtcttcccaaca |
137 |
Q |
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| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaaca |
30118163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 30118138 - 30118074
Alignment:
| Q |
150 |
aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata |
214 |
Q |
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|||||| ||||||| | |||| ||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
30118138 |
aaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaata |
30118074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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