View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_209 (Length: 233)
Name: NF11171A_low_209
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_209 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 3429004 - 3429197
Alignment:
| Q |
21 |
tactaacacctaccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcatt |
120 |
Q |
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| T |
3429004 |
tactaacacctaccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcatt |
3429103 |
T |
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| Q |
121 |
ttcttgtgaagtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttggt |
214 |
Q |
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| T |
3429104 |
ttcttgtgaagtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggaaaaaactacaggggtagccaagaatgttggt |
3429197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 43 - 213
Target Start/End: Original strand, 3425544 - 3425717
Alignment:
| Q |
43 |
ctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaacct---tcattttcttgtgaagtggaagta |
139 |
Q |
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| T |
3425544 |
ctaccacatgactttaccaacaaactaggtaatgaaacacaatcattgtctatgttgtgaagagcaagaacctacttcattttcttgtgaagtggaagta |
3425643 |
T |
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| Q |
140 |
gttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttgg |
213 |
Q |
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| T |
3425644 |
gctggaacaagtacaaggttgtcaatttcattgttaatgatggacaaaactacaggggtagccaagaatgttgg |
3425717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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