View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_211 (Length: 233)
Name: NF11171A_low_211
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_211 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34142440 - 34142215
Alignment:
| Q |
1 |
tgactattaaattaacagtccctctttgagcttgtttatacattattatatagtttatacaattaattgattttgcctcacaaactgggtttttggtagc |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34142440 |
tgactattaaattaaccgtccctctttgagcttgtttatacattattatatagtttatacaattaattgattttgcctcacaaactgggtttttggtagc |
34142341 |
T |
|
| Q |
101 |
aagattatggttgcaaatgagtagagctagttcaatgatttttgaatgcttgttattttccatctgatcaaatgctaagttgctaacatgttttgcatat |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34142340 |
aagattatggttgcaaatgcgtagagctagttcaatgatttttgaatgcttgttattttccatctgatcaaatgctaagttgctaacatgttttgcatat |
34142241 |
T |
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| Q |
201 |
tgatatttgtggttttcagaacacca |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34142240 |
tgatatttgtggttttcagaacacca |
34142215 |
T |
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