View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_214 (Length: 231)
Name: NF11171A_low_214
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_214 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 48016829 - 48017023
Alignment:
| Q |
18 |
aatatcacgatcttcacacacatgagcatatacaatacatgtatctaacatataattttaattttgaccatggaacaaacttgtaatggatcaatccgat |
117 |
Q |
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| T |
48016829 |
aatatcacgatcttcacacacaggagcatatacaatacatgtatctaacatataattttaattttgaccatggaacaaacttgtactggatcaatccgat |
48016928 |
T |
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| Q |
118 |
ccattttttaaatttgctatgacgaggtcttggtggaacaatcagcagcaggctaatttgaatctcttatactagta-ttatttggagcaaaaat |
211 |
Q |
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| T |
48016929 |
ccattttttaaatttgctatgacgatgtcttggtggaacaatcagcagcaggctaatttgaatctcttatactattatttatttggagcaaaaat |
48017023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 48012336 - 48012370
Alignment:
| Q |
42 |
agcatatacaatacatgtatctaacatataatttt |
76 |
Q |
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| T |
48012336 |
agcatatacaatacatgtatctaacatataatttt |
48012370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 48012697 - 48012731
Alignment:
| Q |
42 |
agcatatacaatacatgtatctaacatataatttt |
76 |
Q |
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| T |
48012697 |
agcatatacaatacatgtatctaacatataatttt |
48012731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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