View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_217 (Length: 230)
Name: NF11171A_low_217
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_217 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23227177 - 23226955
Alignment:
| Q |
1 |
gtaacttaacttacactgaaagtatcctgcatgaattaagtcaggcagaggtactttcgtccatttagttgggatggagcgttgggagaagagcaaatta |
100 |
Q |
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| T |
23227177 |
gtaacttaactcacactgaaagtatcctgcatgaattaagtcagacagaggtactttcgtctatttagttgggatggagcgttgggagaagagcaaatta |
23227078 |
T |
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| Q |
101 |
tattcttaatttgtgatcaaccaaaaacacgaacggaattcacaatatgaatagaactttgtagttaatcaattcttaaaaaatataaaactttgtagtt |
200 |
Q |
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| T |
23227077 |
tattcttaatttgtgatcaaccaaaaacacgaacggaattcacaatatgaatagaactttgtagttaatcaattcttaaaaaatataaaactttgtagtt |
23226978 |
T |
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| Q |
201 |
aatcaatttttaacaactatgtc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
23226977 |
aatcaatttttaacaactatgtc |
23226955 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 34003259 - 34003307
Alignment:
| Q |
31 |
atgaattaagtcaggcagaggtactttcgtccatttagttgggatggag |
79 |
Q |
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|||| |||||||| | ||||||||||||||||||| |||||||| |||| |
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| T |
34003259 |
atgacttaagtcacgtagaggtactttcgtccattcagttgggagggag |
34003307 |
T |
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