View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_221 (Length: 230)
Name: NF11171A_low_221
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_221 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9966487 - 9966264
Alignment:
| Q |
1 |
aactcagtatatttgtagtttgaaaaagctatgaatcaatgaattcttttcaccaggcaaatcatatttgactgacagaaccattcaaattcatgaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
9966487 |
aactcagtatatttgtagtttgaaaaagctatgaatcaatgaattcttttcaccaggcaaatcataattgactgacaaaaccattcaaattcatgaaata |
9966388 |
T |
|
| Q |
101 |
ttgcagatgtcactattcgtgcttaaatattgttgaaactgcctgaggaacagcattcatgctaatcatcttgctcagtctgcggggtcattgtagtcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9966387 |
ttgcagatgtcactattcgtgcttaaatattgttgaaactgcctgaggaacagcattcatgctaatcatcttgctcagtctgcgggttcattgtagtcag |
9966288 |
T |
|
| Q |
201 |
ttttgaggtttcagaggcaccttc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
9966287 |
ttttgaggtttcagaggcaccttc |
9966264 |
T |
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