View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_222 (Length: 230)
Name: NF11171A_low_222
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_222 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42208241 - 42208014
Alignment:
| Q |
1 |
taaatatgtactgtatactatttactcaagccagaaaaaagaggcagatcatgtataataattagaggcctaattaggttttaagttatgtcatcattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208241 |
taaatatgtactgtatactatttactcaagccagaaaaaagaggcagatcatgtataataattagaggcctaattaggttttaagttatgtcatcattca |
42208142 |
T |
|
| Q |
101 |
caagtaattgcagtcatgttttctctacacatggtttggaagctacctatgtatgtgtttgtgatctactgatcaaagagattcctccagcataaaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208141 |
caagtaattgcagtcatgttttctctacacatggtttggaagctacctatgtatgtgtttgtgatctactgatcaaagagattcctccagcataaaacca |
42208042 |
T |
|
| Q |
201 |
tcaccaataaattcagaatcaagtccct |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
42208041 |
tcaccaataaattcagaatcaagtccct |
42208014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42215047 - 42214820
Alignment:
| Q |
1 |
taaatatgtactgtatactatttactcaagccagaaaaaagaggcagatcatgtataataattagaggcctaattaggttttaagttatgtcatcattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215047 |
taaatatgtactgtatactatttactcaagccagaaaaaagaggcagatcatgtataataattagaggcctaattaggttttaagttatgtcatcattca |
42214948 |
T |
|
| Q |
101 |
caagtaattgcagtcatgttttctctacacatggtttggaagctacctatgtatgtgtttgtgatctactgatcaaagagattcctccagcataaaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214947 |
caagtaattgcagtcatgttttctctacacatggtttggaagctacctatgtatgtgtttgtgatctactgatcaaagagattcctccagcataaaacca |
42214848 |
T |
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| Q |
201 |
tcaccaataaattcagaatcaagtccct |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42214847 |
tcaccaataaattcagaatcaagtccct |
42214820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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