View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_223 (Length: 230)
Name: NF11171A_low_223
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_223 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28529540 - 28529769
Alignment:
| Q |
1 |
aatatttcaatatgaaaatgccagtactctcctgctacnnnnnnnngttgtaa--atttactcaccatttcccattcattgtgtgcaggactttaattgt |
98 |
Q |
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| T |
28529540 |
aatatttcaatatgaaaatgccagtactctcctgctactttcttttgttgttataatttactcaccatttcccattcattgtgtgcaggactttaattgt |
28529639 |
T |
|
| Q |
99 |
attgctatcgactggagaatgacagaaacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctcaat |
198 |
Q |
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| T |
28529640 |
attgctattgactggagaatgacagaaacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctcaat |
28529739 |
T |
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| Q |
199 |
at----ctatgaagcaccgacacatacatg |
224 |
Q |
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|| ||||||||||||||||||| |||| |
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| T |
28529740 |
atctagctatgaagcaccgacacatgcatg |
28529769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 27926778 - 27926707
Alignment:
| Q |
125 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctca |
196 |
Q |
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| T |
27926778 |
aacacttgttgtacttagaagcataactgatattgtgtatctcttgaacattcttctccaggtaatttctca |
27926707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 28056415 - 28056486
Alignment:
| Q |
125 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctca |
196 |
Q |
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| T |
28056415 |
aacactagttatacttagaagcataactgatgttgtgtatctcttgaacattcttctccaggtaatttctca |
28056486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 28087056 - 28087123
Alignment:
| Q |
125 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaattt |
192 |
Q |
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|||||||||| | ||||||||||| | ||| |||| ||| |||| |||||||||||||||||||||| |
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| T |
28087056 |
aacacttgttgtacttagaagcataaccgatgttgtgtatctcttgaacattcttctccaggtaattt |
28087123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 1435719 - 1435790
Alignment:
| Q |
125 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctca |
196 |
Q |
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|||||||||||| ||||||||||| |||| |||| ||| || | ||||||||||| |||||||||||||| |
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| T |
1435719 |
aacacttgttttacttagaagcatatttgatgttgtgtatctcctgaacattcttcttcaggtaatttctca |
1435790 |
T |
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