View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_225 (Length: 230)
Name: NF11171A_low_225
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_225 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 44187490 - 44187268
Alignment:
| Q |
1 |
ggtgattgaggagtttggtgttagagtagaaaattattgttgccaaatggtagtttacaagaaaaaccttcttccgtttagagttgcagacaattaattt |
100 |
Q |
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| T |
44187490 |
ggtgattgaggagattggtgttagagtagaaaattattgttgccaaatggtagtttacaagaaaaaccttctttcgtttggagttgcagacaattaattt |
44187391 |
T |
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| Q |
101 |
cttttgtagcctttgtgtggagttctcaccatcaaggtttatgagtctagttattaggatttaatatttgattgcaaagttgaactttatgaagttactt |
200 |
Q |
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| T |
44187390 |
cttttgtagcctttgtgtggagttctcaccct-aaggcttatgagtctagttcttaggatttaatattagattgcaaagttgaactttatgaagttactt |
44187292 |
T |
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| Q |
201 |
atatgcaaaatggcttgtcagttg |
224 |
Q |
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|||||| ||| | ||||||||||| |
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| T |
44187291 |
atatgccaaacgacttgtcagttg |
44187268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 19162988 - 19162856
Alignment:
| Q |
93 |
attaatttcttttgtagcctttgtgtggagttctcaccatcaaggtttatgagtctagttattaggatttaatatttgattg-caaagttgaactttatg |
191 |
Q |
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| T |
19162988 |
attaattgcttttatagcctttttgtgaagttttcaccctcaaggtttatgagtctagttcttaggatttgatattctattgcctaagttgaactttctg |
19162889 |
T |
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| Q |
192 |
aagttacttatatgcaaaatggcttgtcagttg |
224 |
Q |
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| T |
19162888 |
aagttgcttatatgcaaactggcttgttagttg |
19162856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 28867005 - 28866885
Alignment:
| Q |
54 |
tttacaagaaaaaccttcttccgtttagagttgcagacaattaatttcttttgtagcctttgtgtggagttctcaccatcaaggtttatgagtctagtta |
153 |
Q |
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|||| ||||||||||||||||| ||| ||||| |||||||||||| |||||||||||||||||||||| | ||| |||||| ||| |||||||||| |
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| T |
28867005 |
tttataagaaaaaccttcttccatttcgagttatagacaattaattgtatttgtagcctttgtgtggagtttttaccctcaagg-ttaggagtctagttc |
28866907 |
T |
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| Q |
154 |
ttaggatttaatatttgattgc |
175 |
Q |
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| T |
28866906 |
ttaggatttgatatttcattgc |
28866885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 28995192 - 28995312
Alignment:
| Q |
54 |
tttacaagaaaaaccttcttccgtttagagttgcagacaattaatttcttttgtagcctttgtgtggagttctcaccatcaaggtttatgagtctagtta |
153 |
Q |
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| T |
28995192 |
tttacaagaaaaatcttcttccatttggagttatagacaattaattgcatttctagcctttgtgtggaattttcaccctcaagg-tcaggagtctagttc |
28995290 |
T |
|
| Q |
154 |
ttaggatttaatatttgattgc |
175 |
Q |
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||||||||| |||||| ||||| |
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| T |
28995291 |
ttaggattttatatttcattgc |
28995312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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