View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_226 (Length: 230)
Name: NF11171A_low_226
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_226 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22399959 - 22399736
Alignment:
| Q |
1 |
tgtagctccagcactatttcccattagaaaacattttgaaaagtcaacatatttagtcaaccattcatcatcacttgacctaatcaaactcaatgcttcc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22399959 |
tgtacctccagcactatttcccattagaaaacattttgaaaagtcaacatatttagtcaaccattcatcatcacttgacctaatcaaactcaatgcttcc |
22399860 |
T |
|
| Q |
101 |
atagcatcatcataagccgctggcaaccggtgctccggcgcgagacgataatcgaccgaggcgacaactgcttcgacggtttccgccatttcagcacaaa |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22399859 |
atagcatcatcataagccgccggcaaccggtgctccggtgcgaggcgataatcgaccgaggcgacaactgcttcgacggtttccgccatttcagcacaaa |
22399760 |
T |
|
| Q |
201 |
aattgtggaacattgtggaggctg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
22399759 |
aattgtggaacattgtggaggctg |
22399736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 22415792 - 22415570
Alignment:
| Q |
2 |
gtagctccagcactatttcccattagaaaacattttgaaaagtcaacatatttagtcaaccattcatcatcacttgacctaatcaaactcaatgcttcca |
101 |
Q |
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||||||||||||||||| |||||||| |||| || ||| |||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |
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| T |
22415792 |
gtagctccagcactattacccattaggtaacacttagaatagtcaacatatttagtcaaccattcatcttgacttgatctaatcaaactcaatgcttcca |
22415693 |
T |
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| Q |
102 |
tagcatcatcataagccgctggcaaccggtgctccggcgcgagacgataatcgaccgaggcgacaactgcttcgacggtttccgccatttcagcacaaaa |
201 |
Q |
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||||||||||||| ||||| || | |||||||||||| ||||| ||||||||||||||||||||||||||||| || || |||||||| ||| |||| || |
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| T |
22415692 |
tagcatcatcatatgccgccggtagccggtgctccggtgcgaggcgataatcgaccgaggcgacaactgcttcaacagtatccgccatatcaacacataa |
22415593 |
T |
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| Q |
202 |
attgtggaacattgtggaggctg |
224 |
Q |
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|| ||||| | |||||||||| |
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| T |
22415592 |
atcatggaagttggtggaggctg |
22415570 |
T |
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