View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_236 (Length: 229)
Name: NF11171A_low_236
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_236 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4082858 - 4082634
Alignment:
| Q |
1 |
atttaatggttttgtttcttggcaaatgatgattgaagggtgtctggggaattcaaattcctatagaaatatatatg--gttttgggaaatgatcaaatg |
98 |
Q |
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| T |
4082858 |
atttaatggttttgtttcttggcaaatgatgattgaagggtgtctggggaattgaaattcctatagaaatatatatatagttttgggaaatgatcaaatg |
4082759 |
T |
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| Q |
99 |
gaaannnnnnnnnnnnnnnnnnnnnnnnnaagaaaaccgtatatggttgctcaaattttggagttgtagggaaggaaacatgtaggggaaagagagagtc |
198 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4082758 |
gaaattttgttttttggtttggtttgttgaagaaaaccgtatatggttgctcaaattttggagttgtagggaaggaaacatgtaggggaaagagagagtc |
4082659 |
T |
|
| Q |
199 |
taaacttggaaaatttagttgatag |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
4082658 |
taaacttggaaaatttagttgatag |
4082634 |
T |
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