View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_239 (Length: 229)
Name: NF11171A_low_239
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_239 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 29408425 - 29408622
Alignment:
| Q |
14 |
atggacatcaggctatagagtgaggactggaataaactttgtagattataaaaatggtctcaaaagatatccagaaatgtcagccatatggtttagaaat |
113 |
Q |
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| T |
29408425 |
atggacattaggctatagagtgaggactggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaat |
29408524 |
T |
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| Q |
114 |
ttcctacaaaagaaaaaagttagctatggcgatttgcgctaagatggtcaacttcatcaatgatgtgtggcttaaatatgattgcaatgagcaatatt |
211 |
Q |
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| T |
29408525 |
ttcctacaaaagaaaaaagttagctatggtgatttgcgctaagatggtcaacttcattaatgatgtgtggcttaaatatgattgcaatgagcaatatt |
29408622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 29456183 - 29456102
Alignment:
| Q |
41 |
tggaataaactttgtagattataaaaatggtctcaaaagatatccagaaatgtcagccatatggtttagaaatttcctacaa |
122 |
Q |
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||||||| ||||||||||||| || ||||| |||||||||||||| ||||||| || || ||||||| ||||| |||||| |
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| T |
29456183 |
tggaatatactttgtagattacaataatggcatcaaaagatatccaaaaatgtctgcaatctggtttaagaattttctacaa |
29456102 |
T |
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