View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_241 (Length: 229)
Name: NF11171A_low_241
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_241 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 12122166 - 12122388
Alignment:
| Q |
7 |
aagctttctatgaggctgccataatttgttactgggacccacagacctcaacccagagattctaaaccctaattttatcgtagaagattctcgatctttc |
106 |
Q |
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| T |
12122166 |
aagctttctatgaggctgccataatttgttactgggacccacagacctcaacccagagattctaaaccctaattttatcgtagaagattctcgatctttc |
12122265 |
T |
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| Q |
107 |
tgtaggcatttccgaatgtaatcttcggaggattgagggtgccatgttcgagaaccaaccttgatgtcgacgacagcggcgttggtgtaattggagacaa |
206 |
Q |
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| T |
12122266 |
tggaggcatttccgaatataatcttcggaggattgaggttgccatgttcgagaaccaatcttgatgtcgacgacagcggcgttggtgtaattggagacaa |
12122365 |
T |
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| Q |
207 |
tatcttctaagataaggtggggg |
229 |
Q |
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| T |
12122366 |
tatcttctaagataaggtggggg |
12122388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 14691688 - 14691907
Alignment:
| Q |
10 |
ctttctatgaggctgccataatttgttactgggacccacagacctcaacccagagattctaaaccctaattttatcgtagaagattctcgatctttctgt |
109 |
Q |
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| T |
14691688 |
ctttttatgaggctgccataattgattagtgggacccactgacctcaaaccggagattctaaaccctaatttgatactagaagattctcgatctttctgg |
14691787 |
T |
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| Q |
110 |
aggcatttccgaatgtaatcttcggaggattgagggtgccatgttcgagaaccaaccttgatgtcgacgacagcggcgttggtgtaattggagacaatat |
209 |
Q |
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| T |
14691788 |
aggcatttccggatgtaatcttcagaggactgtgggtgccatgttcgtgaaccgatcttgatgtcgacgacggcagggttggtgtaattgctgacaatgt |
14691887 |
T |
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| Q |
210 |
cttctaagataaggtggggg |
229 |
Q |
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| T |
14691888 |
cttctaagacgaggtggggg |
14691907 |
T |
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