View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_243 (Length: 228)
Name: NF11171A_low_243
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_243 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45123227 - 45123006
Alignment:
| Q |
1 |
taatagaaaagataaagttcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatataagtatcattttgtttg |
100 |
Q |
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| T |
45123227 |
taatagaaaagataaaattcagatatatacttaaaatatttctgattgatgtatcttgaaatacagaaatcgagcttatatataggtatcactttgtttg |
45123128 |
T |
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| Q |
101 |
ttttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttgttcttcttgcaaagatcacgaa |
200 |
Q |
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| T |
45123127 |
tcttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaacaagtggaggaatcatcttgttcttcttacaaagatcacgaa |
45123028 |
T |
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| Q |
201 |
acaaccttgcttatcttgttct |
222 |
Q |
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| T |
45123027 |
acaaccttgtttatcttgttct |
45123006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 34980595 - 34980546
Alignment:
| Q |
129 |
cctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttg |
178 |
Q |
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| T |
34980595 |
cctacaagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttg |
34980546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 15549684 - 15549756
Alignment:
| Q |
105 |
gcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcacctt |
177 |
Q |
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| T |
15549684 |
gcacttcaagaaacaacattgtggcctacaatacttgtcatgcaagaaaggaaacaagtgaatgaaccacctt |
15549756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 35397425 - 35397486
Alignment:
| Q |
23 |
atatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatata |
84 |
Q |
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| T |
35397425 |
atataaacttaaaatgtttctgactgatgcatcttataataaagaaagagagtttatatata |
35397486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 12467148 - 12467205
Alignment:
| Q |
92 |
ttttgtttgttttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaa |
149 |
Q |
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| T |
12467148 |
ttttgtttgtcttgcacttcaagaaacaagcttgtggcctacaaaacttatcaagcaa |
12467205 |
T |
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