View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_244 (Length: 228)
Name: NF11171A_low_244
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_244 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 32880109 - 32879935
Alignment:
| Q |
21 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
120 |
Q |
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| T |
32880109 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgacttt |
32880010 |
T |
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| Q |
121 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttcattt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32880009 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggtttattt |
32879935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 32898981 - 32898807
Alignment:
| Q |
21 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32898981 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgacttt |
32898882 |
T |
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| Q |
121 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttcattt |
195 |
Q |
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| T |
32898881 |
atacacattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacatcctttcgtggttcattt |
32898807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 32884937 - 32884768
Alignment:
| Q |
21 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||| |
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| T |
32884937 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaag-aggaggagattctatataaaaaagacatatgaatgccttt |
32884839 |
T |
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| Q |
121 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttcattt |
195 |
Q |
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||||||||||||||||||||| | | ||| |||||||||||||||||| |||| || |||||||||||||| |
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| T |
32884838 |
atacatattcttctaaatcatgt----ttcatatatctttgtcaagtggagtgtacatccattcgtggttcattt |
32884768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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