View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_247 (Length: 228)
Name: NF11171A_low_247
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_247 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 46620237 - 46620418
Alignment:
| Q |
21 |
ctgagatgaacccgaggagacagagctctaggaacagacccttaaccgttagagcattggaatgtatagcaaatgaattcctgcatgtgccaaagagaca |
120 |
Q |
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| T |
46620237 |
ctgatatgaatccgaggagacagagctctaggaacagacccttaaccgttagagcattggaatgtatagcaaatgaattcctgcatgtgccaaagagaca |
46620336 |
T |
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| Q |
121 |
gaaaaagaaagatatccagacacaccaagatcctttcaatccttgccgcaaggctcgtacatgaggcaaaataatgctgcat |
202 |
Q |
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| T |
46620337 |
gaaaaagaaagatatccagacacaccaagatcctttcaatccttgccgcaaggctcgtacatgaggcaaaataatgctgcat |
46620418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 46638955 - 46639141
Alignment:
| Q |
21 |
ctgagatgaacccgaggagacagagctctaggaacagacccttaaccgttagagcattggaatgtatagcaaatgaattcctgcatgtgccaaagagaca |
120 |
Q |
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| T |
46638955 |
ctgatatgaatccgaggagacagagctctaggaacagacccttaaccgttagagcattggaatgtatagcaaatgaattcctgcatgtgccaaagagaca |
46639054 |
T |
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| Q |
121 |
gaaaaagaaagatatccagacacaccaagatcctttcaatccttgccgcaaggctcgtacatgaggcaaaataatgctgcattattg |
207 |
Q |
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| T |
46639055 |
gaaaaagaaagacatccagacacaccaagatcctttcaatccttgtcgcaaggctcgtacatgaggcaaaataatgctgcattattg |
46639141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 46630745 - 46630913
Alignment:
| Q |
32 |
ccgaggagacagagctctaggaacagacccttaaccgttagagcattggaatgtatagcaaatgaattcctgcatgtgccaaagagacagaaaaagaaag |
131 |
Q |
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| T |
46630745 |
ccgaggagacagagcaatagaaaaagaccattgacagttagagcattggaatatatagcaaatgaattcttgcatgtgccaaagaggcaaaaaaggaaag |
46630844 |
T |
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| Q |
132 |
atatccagacacaccaagatcctttcaatccttgccgcaaggctcgtacatgaggcaaaataatgctgc |
200 |
Q |
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| T |
46630845 |
acatccagacgcaacaagatcatctcaatccttgctgcaaggattgtaaaagaggcaaaacaatgctgc |
46630913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 35 - 190
Target Start/End: Complemental strand, 46173035 - 46172880
Alignment:
| Q |
35 |
aggagacagagctctaggaacagacccttaaccgttagagcattggaatgtatagcaaatgaattcctgcatgtgccaaagagacagaaaaagaaagata |
134 |
Q |
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| T |
46173035 |
aggagacagagcactagaaacagaccgttgacagttagagcattggaatgtatagcaaatgaatatttgcatgtacagaagaaacaaaaaaagaaagaca |
46172936 |
T |
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| Q |
135 |
tccagacacaccaagatcctttcaatccttgccgcaaggctcgtacatgaggcaaa |
190 |
Q |
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| T |
46172935 |
gccagacccacaaagatcttttcaatccttgccgcaaggctcgaacaaaaggcaaa |
46172880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 46641808 - 46641648
Alignment:
| Q |
34 |
gaggagacagagctctaggaacagacccttaaccgttagagcattggaatgtatagcaaatgaattcctgcatgtgccaaagagacagaaaaagaaagat |
133 |
Q |
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||||||||| ||| |||| |||||| | | || |||||||||||||||||||| ||||||||||| ||||||||| || ||||| |||| || ||| |
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| T |
46641808 |
gaggagacaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgcaaagtagacataaaaggagagac |
46641709 |
T |
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| Q |
134 |
atccagacacaccaagatcctttcaatccttgccgcaaggctcgtacatgaggcaaaataatgctgc |
200 |
Q |
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| T |
46641708 |
a------cacactaagatcctttcaatccttgcggcaaggctcatacaagaggtgaaacaatgctgc |
46641648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 15768173 - 15768046
Alignment:
| Q |
39 |
gacagagctctaggaacagacccttaaccgttagagcattggaatgtatagcaaatgaattcctgcatgtgccaaagagacagaaaaagaaagatatcca |
138 |
Q |
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| T |
15768173 |
gacaaagcactagaaacagaccgttgacagttagagcattagaatgtatagcaaatgaatacctgcacgtacaaaagagacaaaaaaagaaagacatcca |
15768074 |
T |
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| Q |
139 |
gacacaccaagatcctttcaatccttgc |
166 |
Q |
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| T |
15768073 |
gacacatgaagatcctttcaatccttgc |
15768046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 1537853 - 1537904
Alignment:
| Q |
145 |
ccaagatcctttcaatccttgccgcaaggctcgtacatgaggcaaaataatg |
196 |
Q |
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| T |
1537853 |
ccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatg |
1537904 |
T |
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