View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_248 (Length: 228)

Name: NF11171A_low_248
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_248
NF11171A_low_248
[»] chr3 (18 HSPs)
chr3 (21-209)||(41985661-41985852)
chr3 (21-207)||(41980887-41981073)
chr3 (25-104)||(9695616-9695695)
chr3 (20-209)||(9448346-9448535)
chr3 (21-104)||(9329869-9329952)
chr3 (21-90)||(9494822-9494891)
chr3 (20-104)||(9343877-9343961)
chr3 (26-101)||(9655360-9655435)
chr3 (32-101)||(9646367-9646436)
chr3 (21-104)||(9336573-9336656)
chr3 (29-104)||(9407407-9407482)
chr3 (29-104)||(9416614-9416689)
chr3 (32-96)||(9626488-9626552)
chr3 (56-104)||(9686751-9686799)
chr3 (32-110)||(9756424-9756502)
chr3 (31-104)||(9432939-9433012)
chr3 (31-104)||(9617463-9617536)
chr3 (29-101)||(9425614-9425686)
[»] chr8 (2 HSPs)
chr8 (44-209)||(13170579-13170744)
chr8 (20-209)||(44688680-44688869)
[»] chr1 (7 HSPs)
chr1 (122-209)||(18991335-18991422)
chr1 (25-81)||(8814385-8814441)
chr1 (25-86)||(235250-235311)
chr1 (25-86)||(251412-251473)
chr1 (25-79)||(246904-246958)
chr1 (25-81)||(231618-231674)
chr1 (21-99)||(4428664-4428742)
[»] chr6 (7 HSPs)
chr6 (26-104)||(7041534-7041612)
chr6 (24-86)||(7046875-7046937)
chr6 (25-86)||(7025793-7025854)
chr6 (25-86)||(7029850-7029911)
chr6 (25-86)||(9170854-9170915)
chr6 (25-84)||(9159515-9159574)
chr6 (25-86)||(7012857-7012918)
[»] chr2 (1 HSPs)
chr2 (21-101)||(20694304-20694384)
[»] chr7 (2 HSPs)
chr7 (29-104)||(450111-450186)
chr7 (29-91)||(3695731-3695792)
[»] chr5 (1 HSPs)
chr5 (37-90)||(18571160-18571213)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 41985661 - 41985852
Alignment:
Q  21 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985661 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttc 41985760  T
Q  121 accagggaaaccaaaacaatgagagtcatatatgtctactagcaacaac---tcacgctcactctctaccaggaatttcatgtcccctccat 209  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||    
T  41985761 accggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 41980887 - 41981073
Alignment:
Q  21 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttc 120  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||||||||    
T  41980887 cattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttc 41980986  T
Q  121 accagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctcc 207  Q
    ||||||||| |||| ||||||||||| ||| ||||| |||||||| || |||| |||||||||||||||||||||||  ||||||||    
T  41980987 accagggaacccaacacaatgagagtgataaatgtccactagcaataattcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 9695695 - 9695616
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    |||||| |||||||| |||||||||||| | | |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695695 ccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 9448346 - 9448535
Alignment:
Q  20 tcattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatctt 119  Q
    |||||||||||||||||||| |||||||||||| | |  ||||| |||||||||||||||||||||| |||  | |||||||||| | ||| | ||||      
T  9448346 tcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcataaagcttaaacacatcaacccttatagcatcag 9448445  T
Q  120 caccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 209  Q
     ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || || | |||||| |||||||||||||    
T  9448446 gacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaactaagaattttatgtcccctccat 9448535  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 9329869 - 9329952
Alignment:
Q  21 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    |||||||||||||||||||  |||| |||||| ||||||||||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329869 cattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 9494891 - 9494822
Alignment:
Q  21 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 90  Q
    ||||||||||||||||||| |||||||||||||||  ||| || |||||| || ||||||||||||||||    
T  9494891 cattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 9343877 - 9343961
Alignment:
Q  20 tcattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    |||||||||||||||||||| |||||||||||| | |  ||||| ||||| ||||||||| ||||||||||  | ||||||||||    
T  9343877 tcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 9655435 - 9655360
Alignment:
Q  26 cccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 101  Q
    ||||| |||||||| |||||||||||| ||  |||||| |||||||||||||||||||||| || |||||| ||||    
T  9655435 cccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatgaaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 9646436 - 9646367
Alignment:
Q  32 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 101  Q
    |||||||| |||||||||||| ||  |||||| |||||||||||||||||||||| || |||||| ||||    
T  9646436 aacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatgaaatctgaaaacat 9646367  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 9336573 - 9336656
Alignment:
Q  21 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    |||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9336573 cattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 9336656  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 9407407 - 9407482
Alignment:
Q  29 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    ||||||||||| |||||||||||||||  |||||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407407 aagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 9416614 - 9416689
Alignment:
Q  29 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    |||||||| || |||||||||||||||| |||||| |||||||| || | |||||| ||||| | |||||||||||    
T  9416614 aagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatcaa 9416689  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 9626552 - 9626488
Alignment:
Q  32 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaa 96  Q
    |||||||| |||||||||||| ||  ||| || |||||||||||||||||||||| || ||||||    
T  9626552 aacaaaaccctatcccctaaattcatcaaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  56 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 9756424 - 9756502
Alignment:
Q  32 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagcttta 110  Q
    |||||||| |||||||| ||| || |||||||||||||  | ||||| ||||||||||| ||  ||||||||| |||||    
T  9756424 aacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatcaagcctatacacatcaatcttta 9756502  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 9432939 - 9433012
Alignment:
Q  31 gaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    ||||||||| ||||| |||||| ||   | ||| ||||| ||| |||||||||||||||||||||| |||||||    
T  9432939 gaacaaaaccctatctcctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 9617536 - 9617463
Alignment:
Q  31 gaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    ||||||||| |||||||||||| |   |||||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617536 gaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 9425614 - 9425686
Alignment:
Q  29 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 101  Q
    ||||||||||| |||| || |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425614 aagaacaaaaccctattccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

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Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  44 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 143  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  144 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 209  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 44688869 - 44688680
Alignment:
Q  20 tcattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatctt 119  Q
    ||||||||||||||||||| ||||| |||||||||||  ||||| ||||||||||| | ||||||||  ||  ||||||||||||||  || ||||||||    
T  44688869 tcattccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatctt 44688770  T
Q  120 caccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 209  Q
    |||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688769 cacccgggaacccaaaaccatgagagtcatagatgtccactagcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 18991335 - 18991422
Alignment:
Q  122 ccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 209  Q
    |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  |||| |||||||| ||||||||| ||||||||||    
T  18991335 ccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcatatcccctccat 18991422  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 8814441 - 8814385
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 81  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  8814441 ccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctcctt 8814385  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 235250 - 235311
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 86  Q
    ||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| ||||    
T  235250 ccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcat 235311  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 251473 - 251412
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 86  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||    
T  251473 ccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcat 251412  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 246904 - 246958
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 79  Q
    |||||||||||||||| |||| |||||| | |||||||| |||||||||||||||    
T  246904 ccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcc 246958  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 231618 - 231674
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 81  Q
    |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231618 ccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 4428664 - 4428742
Alignment:
Q  21 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 99  Q
    |||||||||| |||||||| |||||||| ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428664 cattccccaaaaacaaaaccctatcccccaaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 7041534 - 7041612
Alignment:
Q  26 cccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    |||||||||||||| |||||||||||||| | |||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041534 cccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 7046875 - 7046937
Alignment:
Q  24 tccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 86  Q
    ||||||||||||||||| |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  7046875 tccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcat 7046937  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 7025793 - 7025854
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 86  Q
    ||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcat 7025854  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 86  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 86  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 9159574 - 9159515
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 84  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctc 9159515  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 7012857 - 7012918
Alignment:
Q  25 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 86  Q
    ||||||||||||||  ||||| |||||||| | |||||| ||||| ||||||||||||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcat 7012918  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 20694384 - 20694304
Alignment:
Q  21 cattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 101  Q
    |||||||||| |||||||| |||||||| ||||| | |||  | ||||||||||||||||| |||||||| ||||||||||    
T  20694384 cattccccaaaaacaaaaccctatcccccaaacttgtcaaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 450186 - 450111
Alignment:
Q  29 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 104  Q
    |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || ||||||||||    
T  450186 aagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 450111  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 3695731 - 3695792
Alignment:
Q  29 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagt 91  Q
    |||||||||||||||||||||||||||  ||||||||  || ||||||| |||||||| ||||    
T  3695731 aagaacaaaactctatcccctaaactctacaacttga-tcacttcttcttcttctcattaagt 3695792  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 18571160 - 18571213
Alignment:
Q  37 aactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 90  Q
    |||| ||||||||||||||| ||| || ||||| ||||||||||||||||||||    
T  18571160 aactgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaag 18571213  T

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