View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_254 (Length: 223)
Name: NF11171A_low_254
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_254 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 3686272 - 3686449
Alignment:
| Q |
1 |
atggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaac-gatgatat------atggcataaaccatat |
93 |
Q |
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| T |
3686272 |
atggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaacagatgtaatgaacaaaaggcataaaccatat |
3686371 |
T |
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| Q |
94 |
atagtactaacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgatgatacaatgaagaagaa |
171 |
Q |
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| T |
3686372 |
ataatactaacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgatgatacaatgaaaaagaa |
3686449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3703320 - 3703388
Alignment:
| Q |
1 |
atggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaac |
69 |
Q |
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| T |
3703320 |
atggaatttatttgaagtagcttgtaactaagacatgaaatgatgataacaataagataggcatgaaac |
3703388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 3687100 - 3687028
Alignment:
| Q |
83 |
ataaaccatatatagtactaacatagtaagaacaattt-agaaaacaaaagcacaagatccctttcaaatgatgat |
157 |
Q |
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| T |
3687100 |
ataaaccatatata---ctaacatagtaagaacaattttaaaaaagaaaagcacatgatccctttcaaatgatgat |
3687028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3675824 - 3675877
Alignment:
| Q |
1 |
atggaatttgtttgaagtaa-cttctaactaagacatgaaacgatgataataat |
53 |
Q |
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| T |
3675824 |
atggaatttatttgaagtaagcttctaactaagacatgaaatgatgacaataat |
3675877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 3686472 - 3686502
Alignment:
| Q |
188 |
caactttgttttacgatcttgctatccccct |
218 |
Q |
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| T |
3686472 |
caactttgttttacgatcttgctatccccct |
3686502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 41979687 - 41979749
Alignment:
| Q |
99 |
actaacatagtaagaacaatttagaaaacaaaagcacaagatccct---ttcaaatgatgata |
158 |
Q |
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| T |
41979687 |
actaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgata |
41979749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 4432410 - 4432462
Alignment:
| Q |
102 |
aacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgat |
154 |
Q |
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| T |
4432410 |
aacatagtaagaacaatttagaaagccaattcacatgatccccttcaaatgat |
4432462 |
T |
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