View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_26 (Length: 421)
Name: NF11171A_low_26
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_26 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 43777442 - 43777845
Alignment:
| Q |
1 |
tagataatattgttcttatcatcagctagttgaacggtttctttctctttaatcccatcagcttttttctctttccgatgatatgaaatcggatcaa-ta |
99 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
43777442 |
tagataatattgttcttattatcagctagttgaacggtttctttctctttaatcccatcagcttctttctctttccgatgatatgaaatcggatcaaata |
43777541 |
T |
|
| Q |
100 |
ttacgaataacaatatatgagctatcaactatcatttaatagctaaccttttatgtttgcaaattttataacatcccttgacgcaggaacgataatgaaa |
199 |
Q |
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| T |
43777542 |
ttacgaataacaatatctgagctatcaactattatttaatagctaaccttttatgtttgcaaattttataacatcccttgacgcaggaacgataatgaaa |
43777641 |
T |
|
| Q |
200 |
aatgtctctgaaacatgttctagttaagcattcgaaacgacaattaatcaaaaatgtcgaaaaagcatgagcttgagctacaactagcataatcaccaac |
299 |
Q |
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| T |
43777642 |
aatgtctctgaaacatgttctagttaaacattcgaaacgacaattaataaaaaatgtcgaaaaagcatcagcttgagttacaactagcataatcaccaac |
43777741 |
T |
|
| Q |
300 |
atcatcgcaaaacattttttcacatggctcactgccataactctttttaatattttgtaacttttcttaatctccacttaaattctcaactctgtgatgt |
399 |
Q |
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| T |
43777742 |
atcatcgcaaaacattttttcacatggctcactgccataactctttttaatatt---taacttttcttaatctccacttaaattctcaactctgtgatgt |
43777838 |
T |
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| Q |
400 |
ttcagat |
406 |
Q |
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| T |
43777839 |
ttcagat |
43777845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 193 - 406
Target Start/End: Original strand, 43781181 - 43781391
Alignment:
| Q |
193 |
aatgaaaaatgtctctgaaacatgttctagttaagcattcgaaacgacaattaatcaaaaatgtcgaaaaagcatgagcttgagctacaactagcataat |
292 |
Q |
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|||| ||||||||||| ||||||||| | ||||| ||| ||| |||||| | ||| ||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
43781181 |
aatggaaaatgtctctaaaacatgttatcgttaaacatccgacacgacattcaat---aaatggcgaaaaagcatgaggttgagttacaactagcataat |
43781277 |
T |
|
| Q |
293 |
caccaacatcatcgcaaaacattttttcacatggctcactgccataactctttttaatattttgtaacttttcttaatctccacttaaattctcaactct |
392 |
Q |
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| T |
43781278 |
caccaacatcatcgtaaaacattttttcacttggctcactaccataactctttttaatattttttaacttttcttaatctccactaaaattctcaacttt |
43781377 |
T |
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| Q |
393 |
gtgatgtttcagat |
406 |
Q |
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| T |
43781378 |
gtgatgtttcagat |
43781391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 43770344 - 43770409
Alignment:
| Q |
341 |
tctttttaatattttgtaacttttcttaatctccacttaaattctcaactctgtgatgtttcagat |
406 |
Q |
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| T |
43770344 |
tctttttaatattttttaacttttcttaatcaccactaaaattctcaactttgtgatgtttcagat |
43770409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 18159170 - 18159221
Alignment:
| Q |
76 |
cgatgatatgaaatcggatcaatattacgaataacaatatatgagctatcaa |
127 |
Q |
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| T |
18159170 |
cgatgatataaaatcggatcaatatcacgaataacaatatctgagctatcaa |
18159221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 419157 - 419206
Alignment:
| Q |
78 |
atgatatgaaatcggatcaatattacgaataacaatatatgagctatcaa |
127 |
Q |
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||||||| |||||| |||||||| |||||||||||||| ||||||||||| |
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| T |
419157 |
atgatataaaatcgaatcaatatcacgaataacaatatctgagctatcaa |
419206 |
T |
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