View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_262 (Length: 220)
Name: NF11171A_low_262
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_262 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 7820923 - 7821109
Alignment:
| Q |
1 |
atcgatttatgttgatgaagtataaaataaaaaattaccctgattaaaaccaaagtttgctatatttagaaggattaaatgaataatgaagccttatttt |
100 |
Q |
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| T |
7820923 |
atcgatttatgttgatgaagtataaaataaaaaattatcctgattaaaatcaaagtttgctatatttagaaggactgaatgaataatcaagccttatttt |
7821022 |
T |
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| Q |
101 |
tattactctaatttataataagcgacctatataacatttatccnnnnnnnnnatatgtaaaatagacagaaatttttcatgattgtc |
187 |
Q |
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| T |
7821023 |
tattactctaatttataataagcgacctatataacatttatcctttttttttttatgtaaaattgacagaaatttttcatgattgtc |
7821109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 7810960 - 7811097
Alignment:
| Q |
4 |
gatttatgttgatgaagtataaaataaaaaattaccctgattaaaaccaaagtttgctatatttagaaggattaaatgaataatgaagccttatttttat |
103 |
Q |
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| T |
7810960 |
gattcatgttgatgaagta-aacacaaaaaattatcccgactaaaattaaagtttgct-tatttgcaaggactaaatgaataatcaaaccttatttttat |
7811057 |
T |
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| Q |
104 |
tactctaatttataataagcgacctatataacatttatcc |
143 |
Q |
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| T |
7811058 |
tactctaatttataatatgcgacctatatgacatttatcc |
7811097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 7811161 - 7811190
Alignment:
| Q |
191 |
gaaggtaaggaagttaagttggaaatgaag |
220 |
Q |
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| T |
7811161 |
gaaggtaaggaagttaagttggaaatgaag |
7811190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 7811357 - 7811386
Alignment:
| Q |
191 |
gaaggtaaggaagttaagttggaaatgaag |
220 |
Q |
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| T |
7811357 |
gaaggtaaggaagttaagttggaaatgaag |
7811386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 7821129 - 7821158
Alignment:
| Q |
191 |
gaaggtaaggaagttaagttggaaatgaag |
220 |
Q |
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| T |
7821129 |
gaaggtaaggaagttaagttggaaatgaag |
7821158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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