View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_263 (Length: 219)

Name: NF11171A_low_263
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_263
NF11171A_low_263
[»] chr6 (10 HSPs)
chr6 (23-219)||(26975529-26975725)
chr6 (27-219)||(26636224-26636416)
chr6 (27-219)||(26742190-26742382)
chr6 (23-219)||(26950321-26950517)
chr6 (23-219)||(26959704-26959900)
chr6 (23-207)||(27664613-27664797)
chr6 (23-219)||(26849290-26849486)
chr6 (26-219)||(25074448-25074638)
chr6 (116-219)||(31288883-31288986)
chr6 (23-79)||(31288986-31289042)
[»] chr2 (1 HSPs)
chr2 (26-219)||(17992626-17992819)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 26975725 - 26975529
Alignment:
Q  23 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  26975725 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagtagtgagttcacttttaatattcgag 26975626  T
Q  123 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata 219  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26975625 atttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcata 26975529  T

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Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 26636416 - 26636224
Alignment:
Q  27 ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 126  Q
    ||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26636416 ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 26636317  T
Q  127 gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata 219  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26636316 gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcata 26636224  T

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Target: chr6; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 26742382 - 26742190
Alignment:
Q  27 ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 126  Q
    ||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26742382 ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 26742283  T
Q  127 gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata 219  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26742282 gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcata 26742190  T

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Target: chr6; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 26950517 - 26950321
Alignment:
Q  23 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 122  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| |||||||||||||||||||    
T  26950517 agtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttctgatattcgag 26950418  T
Q  123 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata 219  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950417 atttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata 26950321  T

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Target: chr6; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 26959900 - 26959704
Alignment:
Q  23 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 122  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| ||||||| |||||||||||    
T  26959900 agtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttttgatattcgag 26959801  T
Q  123 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata 219  Q
    ||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  26959800 atttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactattttttcaataaaatcacgttcata 26959704  T

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Target: chr6; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 27664613 - 27664797
Alignment:
Q  23 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 122  Q
    ||||||||||||||||  || |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||||||||||    
T  27664613 agtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaattcacttctgatattcgag 27664712  T
Q  123 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaa 207  Q
    ||| ||||||||| ||||| ||||||||||||| | ||    |||||||||||| |||||||||||||||||||| |||||||||    
T  27664713 attcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaa 27664797  T

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Target: chr6; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 26849486 - 26849290
Alignment:
Q  23 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 122  Q
    |||||||| || |||||||| ||||||||||||||||||||| |  ||||||||||| ||||  |||| ||||||||||| |||||||||||||||||||    
T  26849486 agtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattctagaagtgaattcacttctgatattcgag 26849387  T
Q  123 atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata 219  Q
    |||| |||||||| ||||||||||||||||| | |||||| ||||||||||||| |||||| ||  ||||||||||  ||||||||| | |||||||    
T  26849386 atttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaaatggtgttcata 26849290  T

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Target: chr6; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 25074638 - 25074448
Alignment:
Q  26 gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 125  Q
    |||||||| |||||||| |||||||||| ||||||||||||| | |||||||   || | ||||||||||||||||| ||||||||||| |||||||||     
T  25074638 gttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtctagaagtgaattcacttctgaaattcgagatc 25074542  T
Q  126 tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata 219  Q
      || ||||| |||||||||| |||||||| |||||  ||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  25074541 gaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtctctaactattttttcaataaaatcacgttcata 25074448  T

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Target: chr6; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 31288986 - 31288883
Alignment:
Q  116 attcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgtt 215  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||||||||||||| ||||    
T  31288986 attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt 31288887  T
Q  216 cata 219  Q
    ||||    
T  31288886 cata 31288883  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 31289042 - 31288986
Alignment:
Q  23 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatca 79  Q
    |||||||| |||||| |||| ||||||||||| |||||||||||| |||||||||||    
T  31289042 agtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca 31288986  T

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Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 17992626 - 17992819
Alignment:
Q  26 gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 125  Q
    |||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| || |  |||||||||||||||| ||||||||||||||||||||||    
T  17992626 gttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatt 17992725  T
Q  126 tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata 219  Q
    |||| ||||  |||||||| ||||||||||  ||||||||||| ||||||| |||   ||||||||||||||||||||||||||| ||||||||    
T  17992726 tgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactattttttcaataaaatcacgttcata 17992819  T

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