View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_264 (Length: 219)
Name: NF11171A_low_264
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_264 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 7001570 - 7001367
Alignment:
| Q |
16 |
gaagaaaatgtatactccctcccactcaagttttgagatattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttatta |
115 |
Q |
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| T |
7001570 |
gaagaaaatgtatactccctcccactcaagttttgagctattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttatta |
7001471 |
T |
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| Q |
116 |
aagttccataaagtgtgacagtgttgaatttgccaaaaacattggatcaaaatgcaacaaagcttgctaagggtaaattcatgtaaaaatttattatgca |
215 |
Q |
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| T |
7001470 |
aagttccataaagtatgacagtgttgaatttgccaaaaacattggatcaaaatgcaacaaagcttgctaagggtaaattcatgtaaaaattgattacgca |
7001371 |
T |
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| Q |
216 |
tact |
219 |
Q |
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|||| |
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| T |
7001370 |
tact |
7001367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 10792877 - 10792924
Alignment:
| Q |
37 |
ccactcaagttttgagatattagaggtgctggaggagcaagttttgga |
84 |
Q |
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| T |
10792877 |
ccactcatgttttgagctattagaggaggtggaggagcaagttttgga |
10792924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 38061876 - 38061749
Alignment:
| Q |
54 |
tattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaatttgccaaaa |
153 |
Q |
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| T |
38061876 |
tattagaggaggtggaggagcaagttttggagtcataatttcatggaaggttaaacttgttcaagttccatcaagtgtgtcagtgttcaatgtgccaaaa |
38061777 |
T |
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| Q |
154 |
acattggatcaaaatgcaacaaagcttg |
181 |
Q |
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| T |
38061776 |
acattggatcaaaatgcaacaaagcttg |
38061749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 38058569 - 38058704
Alignment:
| Q |
45 |
gttttgagatattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaat |
144 |
Q |
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| T |
38058569 |
gttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagattaaacttgttcaagttccatcaattgtgacagtcttcaat |
38058668 |
T |
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| Q |
145 |
ttgccaaaaacattggatcaaaatgcaacaaagctt |
180 |
Q |
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| T |
38058669 |
gttccaaaaacattggaacacaatgcaacaaagctt |
38058704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 38086416 - 38086543
Alignment:
| Q |
54 |
tattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaatttgccaaaa |
153 |
Q |
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| T |
38086416 |
tattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgtttactgttccaaaa |
38086515 |
T |
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| Q |
154 |
acattggatcaaaatgcaacaaagcttg |
181 |
Q |
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| T |
38086516 |
acattggaacaaaatgcaacaaagcttg |
38086543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 38072897 - 38073033
Alignment:
| Q |
45 |
gttttgagatattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaat |
144 |
Q |
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| T |
38072897 |
gttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttcaagttccatcaactgtaacggtgtttact |
38072996 |
T |
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| Q |
145 |
ttgccaaaaacattggatcaaaatgcaacaaagcttg |
181 |
Q |
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| T |
38072997 |
gttccaagaacattggaacaaaatgcaacaaagcttg |
38073033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 38081991 - 38082118
Alignment:
| Q |
54 |
tattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaatttgccaaaa |
153 |
Q |
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| T |
38081991 |
tattagaggtggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtgtttacagttccaaga |
38082090 |
T |
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| Q |
154 |
acattggatcaaaatgcaacaaagcttg |
181 |
Q |
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| T |
38082091 |
gcattggaacaaaatgcaacaaagcttg |
38082118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 34268758 - 34268711
Alignment:
| Q |
37 |
ccactcaagttttgagatattagaggtgctggaggagcaagttttgga |
84 |
Q |
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| T |
34268758 |
ccactcatgttttgagctattagaggaggtggaggagcaagttttgga |
34268711 |
T |
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