View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_28 (Length: 421)
Name: NF11171A_low_28
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 6 - 415
Target Start/End: Original strand, 33498967 - 33499377
Alignment:
| Q |
6 |
tggtgttagagaaacataagattgatgttatttctgccaaccttatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
105 |
Q |
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| T |
33498967 |
tggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
33499066 |
T |
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| Q |
106 |
ttctcttctcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaa |
205 |
Q |
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| T |
33499067 |
ttctcttctcttgagtagtgtgagagcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaa |
33499166 |
T |
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| Q |
206 |
cttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttcc-tccta |
304 |
Q |
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| T |
33499167 |
cttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttccttccga |
33499266 |
T |
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| Q |
305 |
tcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttccaat |
404 |
Q |
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| T |
33499267 |
tcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttctaat |
33499366 |
T |
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| Q |
405 |
attgtaaactg |
415 |
Q |
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| T |
33499367 |
attgtaaactg |
33499377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 33485756 - 33485867
Alignment:
| Q |
6 |
tggtgttagagaaacataagattgatgttatttctgccaaccttatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
105 |
Q |
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| T |
33485756 |
tggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaacc |
33485855 |
T |
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| Q |
106 |
ttctcttctctt |
117 |
Q |
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| T |
33485856 |
ttctctcctctt |
33485867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 114 - 268
Target Start/End: Original strand, 33486058 - 33486212
Alignment:
| Q |
114 |
tcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaacttacaag |
213 |
Q |
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| T |
33486058 |
tcttgagtagtacgagtgtgaatagctcaattgaattgtcttaattttgcaggcaaaacaagcttcacatgacgcaaattcaatgaaggaaacatacaag |
33486157 |
T |
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| Q |
214 |
caagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaactt |
268 |
Q |
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| T |
33486158 |
catgcggctggagaaattatgatgtggatcgcttagaattttgatcataaaactt |
33486212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 329 - 401
Target Start/End: Original strand, 33486210 - 33486284
Alignment:
| Q |
329 |
ctttgatggtcctatgagacatttt-atggtgtttaaactagtta-aattatttgctttttgtgtttgcttttcc |
401 |
Q |
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| T |
33486210 |
ctttgatggtcctaagagcaatttttatggtgtttaaactagttttaattatatgctttttgtgtttgcttttcc |
33486284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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