View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_285 (Length: 207)

Name: NF11171A_low_285
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_285
NF11171A_low_285
[»] chr6 (9 HSPs)
chr6 (15-189)||(28097221-28097395)
chr6 (62-177)||(29827263-29827378)
chr6 (24-90)||(28186633-28186699)
chr6 (24-87)||(28326717-28326780)
chr6 (24-87)||(28504353-28504416)
chr6 (44-174)||(27697379-27697509)
chr6 (24-90)||(28296617-28296683)
chr6 (24-90)||(28515390-28515456)
chr6 (62-174)||(29842785-29842897)
[»] chr2 (1 HSPs)
chr2 (15-174)||(3280889-3281048)
[»] chr5 (1 HSPs)
chr5 (24-189)||(16692106-16692271)
[»] scaffold0019 (1 HSPs)
scaffold0019 (26-189)||(57072-57235)
[»] chr8 (1 HSPs)
chr8 (53-189)||(31906322-31906458)
[»] chr4 (1 HSPs)
chr4 (24-145)||(5089772-5089893)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 28097395 - 28097221
Alignment:
Q  15 attatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaag 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097395 attatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaag 28097296  T
Q  115 aattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097295 aattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 28097221  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 29827263 - 29827378
Alignment:
Q  62 ttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatg 161  Q
    |||| ||||||| |||||||||||||||| ||| | || ||| |||||||||| ||||||| | ||||||| ||||| ||||||    | ||||||||||    
T  29827263 ttgtttggaaagaatatagaagaatggaaatctatattagatagatatgaaaggattcctaataaagagatccaaaatatacttaaaataagttttgatg 29827362  T
Q  162 ctttggaggaagatga 177  Q
    ||||||||||||||||    
T  29827363 ctttggaggaagatga 29827378  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 28186633 - 28186699
Alignment:
Q  24 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 90  Q
    |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| |||||||||    
T  28186633 ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataggagaatggaa 28186699  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 28326717 - 28326780
Alignment:
Q  24 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 87  Q
    |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28326717 ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28326780  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 28504353 - 28504416
Alignment:
Q  24 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 87  Q
    |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28504353 ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28504416  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 27697509 - 27697379
Alignment:
Q  44 gaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatac 143  Q
    |||||| | ||||| ||||||| ||||||| | |||||||||||||| | | | || ||| | ||||| || ||||| | | ||||||| ||||| ||||    
T  27697509 gaaatagtgggttctaacttgtttggaaagaacatagaagaatggaagtatatattagatgggtatgacaggattcccaataaagagatccaaaagatac 27697410  T
Q  144 ttcgtgtgagttttgatgctttggaggaaga 174  Q
    || | ||||| | |||||||||||| |||||    
T  27697409 ttagagtgagctatgatgctttggaagaaga 27697379  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 28296683 - 28296617
Alignment:
Q  24 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 90  Q
    |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28296683 ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28296617  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 28515390 - 28515456
Alignment:
Q  24 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 90  Q
    |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28515390 ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28515456  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 29842897 - 29842785
Alignment:
Q  62 ttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatg 161  Q
    |||| ||||||| |||||||||||||||| |||   || ||| | |||||||| ||||||| | ||||||| || || ||||||    | || |||||||    
T  29842897 ttgtttggaaagaatatagaagaatggaaatctacattagataggtatgaaaggattcctaataaagagatccacaatatacttaaaataagctttgatg 29842798  T
Q  162 ctttggaggaaga 174  Q
    |||||||||||||    
T  29842797 ctttggaggaaga 29842785  T

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Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 3280889 - 3281048
Alignment:
Q  15 attatactgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaag 114  Q
    ||||| || |||||||||||||||| || ||| |||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  3280889 attatgcttctggccttccattggcattagaagtattaggttccaacttgtttggaaagaatataaaagagtggaattctttgttggatcgatatgaaag 3280988  T
Q  115 aattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaaga 174  Q
     ||||||| | |||||||||| || ||||||   ||||||||||||||||||||||||||    
T  3280989 gattcctaataaagagattcagaagatacttaaagtgagttttgatgctttggaggaaga 3281048  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 16692106 - 16692271
Alignment:
Q  24 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctag 123  Q
    ||||||||||||| || || ||| || |||| || ||||||| ||||||| |||||||||||||||| |||   || |||||||||||| | |||||| |    
T  16692106 ctggccttccattagctttagaagtagtaggatctaacttgtttggaaagaatatagaagaatggaaatctacatttgatcgatatgaatggattcctgg 16692205  T
Q  124 tgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 189  Q
    | ||   ||||| |||||||||   || |||||||||  ||||||||||||||| | |||||||||    
T  16692206 taaacgaattcacaaaatacttaaagtaagttttgatagtttggaggaagatgaaaagagtgtttt 16692271  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 57235 - 57072
Alignment:
Q  26 ggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtg 125  Q
    ||||||||||||||||| ||| || | ||||| ||||||| ||||||| |||||| ||||||||| |||   ||  |||  |||||||| ||||| | |     
T  57235 ggccttccattggccttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccatta 57136  T
Q  126 aagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 189  Q
    || |||| ||| | ||||||   || || ||||||||||||||||||||||||| || ||||||    
T  57135 aaaagatccaagagatacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttt 57072  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 31906322 - 31906458
Alignment:
Q  53 ggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtga 152  Q
    |||||||| || | ||||||| ||||| |||||||| | |||   ||  ||||||||||||  ||||| | | ||||||| ||||| |||||    || |    
T  31906322 ggttccaatttatttggaaagaatatacaagaatgggaatctgcattacatcgatatgaaatcattccaaataaagagatccaaaatatactcaaagtaa 31906421  T
Q  153 gttttgatgctttggaggaagatgagaggagtgtttt 189  Q
    |||||||||||||||||||||||||||  ||||||||    
T  31906422 gttttgatgctttggaggaagatgagaaaagtgtttt 31906458  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 5089893 - 5089772
Alignment:
Q  24 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctag 123  Q
    |||||||||||||||| || ||| |  | |||||||| |||| ||||||| |||||||| ||||||| |||||  | |||   |||||||| |||||||     
T  5089893 ctggccttccattggctttagaagttgtgggttccaatttgtttggaaaggatatagaaaaatggaaatctttactagatgagtatgaaaggattcctaa 5089794  T
Q  124 tgaagagattcaaaaaatactt 145  Q
    | |||| || ||||| ||||||    
T  5089793 taaagaaatccaaaagatactt 5089772  T

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