View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171A_low_288 (Length: 205)
Name: NF11171A_low_288
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_288 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 7934367 - 7934566
Alignment:
| Q |
1 |
aatgaaggcaaacaaagagattaatttaagtatatcacgtgttcatatga-gcgttggtgctacatagcctagaagagctgtcataattctgcattcaaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7934367 |
aatgaaggcaaacaaagagattaatttaagtatatcacgtgttcatatgaagtgttggtgctacatagcctcgaagagctgtcataattctgcattcaaa |
7934466 |
T |
|
| Q |
100 |
gggaattatttcacattttacagcaacaggatacagaattctatcaaatacctatagcaccaatagcatcaagcctatcagcatcttggacaacaccaaa |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7934467 |
gggaattatttcacattttccagcaacaggatacagaattctatcaaatacctatagcaccaatagcatcaagcctatcagcatcttggacaacaccaaa |
7934566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University